Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.25■□□□□ 0.35
FOXN3O00409 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXN3O00409 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 AC092850.2-201ENST00000623821 2697 ntBASIC17.24■□□□□ 0.35
FOXN3O00409 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXN3O00409 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
FOXN3O00409 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.24■□□□□ 0.35
FOXN3O00409 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.24■□□□□ 0.35
FOXN3O00409 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXN3O00409 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.24■□□□□ 0.35
FOXN3O00409 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXN3O00409 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 HLA-H-201ENST00000383620 1096 ntBASIC17.24■□□□□ 0.35
FOXN3O00409 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.24■□□□□ 0.35
FOXN3O00409 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXN3O00409 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXN3O00409 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
FOXN3O00409 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXN3O00409 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
FOXN3O00409 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXN3O00409 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
FOXN3O00409 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXN3O00409 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXN3O00409 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXN3O00409 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
FOXN3O00409 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
FOXN3O00409 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
FOXN3O00409 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 RPSAP43-201ENST00000402237 625 ntBASIC17.23■□□□□ 0.35
FOXN3O00409 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXN3O00409 FAM58DP-201ENST00000428076 619 ntBASIC17.23■□□□□ 0.35
FOXN3O00409 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.23■□□□□ 0.35
FOXN3O00409 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXN3O00409 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXN3O00409 AC243562.2-201ENST00000561247 970 ntBASIC17.23■□□□□ 0.35
FOXN3O00409 AC093520.2-201ENST00000561830 333 ntBASIC17.23■□□□□ 0.35
FOXN3O00409 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.23■□□□□ 0.35
FOXN3O00409 AL513210.1-201ENST00000629608 234 ntBASIC17.23■□□□□ 0.35
FOXN3O00409 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
FOXN3O00409 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
FOXN3O00409 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
FOXN3O00409 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
FOXN3O00409 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXN3O00409 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXN3O00409 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXN3O00409 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.22■□□□□ 0.35
FOXN3O00409 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.22■□□□□ 0.35
FOXN3O00409 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXN3O00409 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.22■□□□□ 0.35
FOXN3O00409 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXN3O00409 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXN3O00409 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXN3O00409 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXN3O00409 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
FOXN3O00409 AC004461.1-201ENST00000412461 403 ntBASIC17.22■□□□□ 0.35
FOXN3O00409 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
FOXN3O00409 RPS8P6-201ENST00000426177 609 ntBASIC17.22■□□□□ 0.35
FOXN3O00409 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
FOXN3O00409 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXN3O00409 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms