Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 AL009183.1-201ENST00000603760 355 ntBASIC13.08□□□□□ -0.32
FOXA2Q9Y261 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 LINC00554-201ENST00000564841 3011 ntBASIC13.08□□□□□ -0.32
FOXA2Q9Y261 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 ING5-213ENST00000636051 4199 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 RELA-227ENST00000615805 2236 ntTSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 MIR3687-2-201ENST00000577708 61 ntBASIC13.07□□□□□ -0.32
FOXA2Q9Y261 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 AL365330.1-201ENST00000607459 531 ntBASIC13.07□□□□□ -0.32
FOXA2Q9Y261 MIR3687-1-201ENST00000614492 61 ntBASIC13.07□□□□□ -0.32
FOXA2Q9Y261 AL161645.1-201ENST00000622716 1255 ntBASIC13.07□□□□□ -0.32
FOXA2Q9Y261 C20orf181-201ENST00000623918 480 ntBASIC13.07□□□□□ -0.32
FOXA2Q9Y261 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 PRAL-201ENST00000624952 3286 ntBASIC13.07□□□□□ -0.32
FOXA2Q9Y261 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 HYMAI-201ENST00000635591 3347 ntBASIC13.07□□□□□ -0.32
FOXA2Q9Y261 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 DKFZP434H168-201ENST00000567381 1905 ntBASIC13.07□□□□□ -0.32
FOXA2Q9Y261 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
FOXA2Q9Y261 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 AC126755.1-201ENST00000525846 6405 ntBASIC13.06□□□□□ -0.32
FOXA2Q9Y261 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 TSPY26P-202ENST00000565928 3884 ntBASIC13.06□□□□□ -0.32
FOXA2Q9Y261 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 YBX2P1-201ENST00000394192 760 ntBASIC13.06□□□□□ -0.32
FOXA2Q9Y261 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms