Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 AC073347.1-201ENST00000421633 2643 ntBASIC19.43■□□□□ 0.7
SALL3Q9BXA9 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 KLF2P3-201ENST00000451977 1087 ntBASIC19.43■□□□□ 0.7
SALL3Q9BXA9 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 Z97205.2-201ENST00000564697 1639 ntBASIC19.43■□□□□ 0.7
SALL3Q9BXA9 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
SALL3Q9BXA9 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 AC112693.3-201ENST00000624819 1983 ntBASIC19.42■□□□□ 0.7
SALL3Q9BXA9 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.42■□□□□ 0.7
SALL3Q9BXA9 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 METTL21AP1-201ENST00000438852 635 ntBASIC19.42■□□□□ 0.7
SALL3Q9BXA9 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 AC140878.1-201ENST00000565277 250 ntBASIC19.42■□□□□ 0.7
SALL3Q9BXA9 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 AL844908.2-201ENST00000609461 460 ntBASIC19.42■□□□□ 0.7
SALL3Q9BXA9 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SALL3Q9BXA9 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 TMBIM7P-203ENST00000641617 1718 ntBASIC19.41■□□□□ 0.7
SALL3Q9BXA9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 TSSK5P-201ENST00000423978 907 ntBASIC19.41■□□□□ 0.7
SALL3Q9BXA9 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.41■□□□□ 0.7
SALL3Q9BXA9 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms