Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.51■□□□□ 0.71
RPAP1Q9BWH6 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 API5-211ENST00000534695 560 ntTSL 5 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 AC061975.2-201ENST00000581722 295 ntBASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 OR6D1P-202ENST00000641007 5290 ntBASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RPAP1Q9BWH6 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 AC010336.2-201ENST00000564226 506 ntBASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
RPAP1Q9BWH6 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 RPS19-201ENST00000221975 500 ntTSL 3 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 RBM39-205ENST00000397370 612 ntTSL 2 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 AC245100.5-201ENST00000452108 331 ntBASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC19.48■□□□□ 0.71
RPAP1Q9BWH6 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms