Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC65Q8IXS2 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 FLJ16779-201ENST00000612722 7638 ntBASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 AC243562.2-201ENST00000561247 970 ntBASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 RARRES2P9-201ENST00000565168 469 ntBASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC65Q8IXS2 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 AP005117.1-202ENST00000581724 1908 ntBASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 AC011477.6-201ENST00000604980 1927 ntBASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 FAM58DP-201ENST00000428076 619 ntBASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 ALG1L8P-201ENST00000533887 760 ntBASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 AC093520.2-201ENST00000561830 333 ntBASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC65Q8IXS2 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
CCDC65Q8IXS2 AL691432.1-201ENST00000596308 1422 ntBASIC17.89■□□□□ 0.46
CCDC65Q8IXS2 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC65Q8IXS2 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.89■□□□□ 0.46
CCDC65Q8IXS2 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC65Q8IXS2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
CCDC65Q8IXS2 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC65Q8IXS2 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms