Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.06■□□□□ 0.32
LIG3P49916 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIG3P49916 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.05■□□□□ 0.32
LIG3P49916 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.05■□□□□ 0.32
LIG3P49916 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.05■□□□□ 0.32
LIG3P49916 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
LIG3P49916 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
LIG3P49916 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.05■□□□□ 0.32
LIG3P49916 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.05■□□□□ 0.32
LIG3P49916 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
LIG3P49916 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.05■□□□□ 0.32
LIG3P49916 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
LIG3P49916 CXCL1P1-201ENST00000502804 216 ntBASIC17.05■□□□□ 0.32
LIG3P49916 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.05■□□□□ 0.32
LIG3P49916 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.05■□□□□ 0.32
LIG3P49916 AC002347.1-201ENST00000569543 541 ntBASIC17.05■□□□□ 0.32
LIG3P49916 AC092865.6-201ENST00000642101 219 ntBASIC17.05■□□□□ 0.32
LIG3P49916 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LIG3P49916 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.05■□□□□ 0.32
LIG3P49916 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
LIG3P49916 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 HLA-A-202ENST00000376806 1854 ntBASIC17.05■□□□□ 0.32
LIG3P49916 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
LIG3P49916 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC17.05■□□□□ 0.32
LIG3P49916 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.05■□□□□ 0.32
LIG3P49916 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIG3P49916 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 AC002310.6-201ENST00000624451 1377 ntBASIC17.04■□□□□ 0.32
LIG3P49916 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.04■□□□□ 0.32
LIG3P49916 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.04■□□□□ 0.32
LIG3P49916 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.04■□□□□ 0.32
LIG3P49916 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 FAM185BP-201ENST00000443595 716 ntBASIC17.04■□□□□ 0.32
LIG3P49916 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.04■□□□□ 0.32
LIG3P49916 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.04■□□□□ 0.32
LIG3P49916 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.04■□□□□ 0.32
LIG3P49916 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LIG3P49916 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.04■□□□□ 0.32
LIG3P49916 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LIG3P49916 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.04■□□□□ 0.32
LIG3P49916 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.04■□□□□ 0.32
LIG3P49916 PPP1R26P4-201ENST00000619065 3527 ntBASIC17.04■□□□□ 0.32
LIG3P49916 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
LIG3P49916 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIG3P49916 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.04■□□□□ 0.32
LIG3P49916 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 AC129492.6-201ENST00000611383 1305 ntBASIC17.03■□□□□ 0.32
LIG3P49916 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.03■□□□□ 0.32
LIG3P49916 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC17.03■□□□□ 0.32
LIG3P49916 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 C8orf49-201ENST00000525043 1968 ntBASIC17.03■□□□□ 0.32
LIG3P49916 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 YBX2P1-201ENST00000394192 760 ntBASIC17.03■□□□□ 0.32
LIG3P49916 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.03■□□□□ 0.32
LIG3P49916 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.03■□□□□ 0.32
LIG3P49916 AC004832.2-201ENST00000426397 482 ntBASIC17.03■□□□□ 0.32
LIG3P49916 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.03■□□□□ 0.32
LIG3P49916 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.03■□□□□ 0.32
LIG3P49916 RHOQP3-201ENST00000437982 621 ntBASIC17.03■□□□□ 0.32
LIG3P49916 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.03■□□□□ 0.32
LIG3P49916 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LIG3P49916 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.03■□□□□ 0.32
LIG3P49916 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.03■□□□□ 0.32
LIG3P49916 AL513190.1-201ENST00000621254 727 ntBASIC17.03■□□□□ 0.32
LIG3P49916 AC004877.2-201ENST00000623941 599 ntBASIC17.03■□□□□ 0.32
LIG3P49916 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms