Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.09■□□□□ 0.49
CIITAP33076 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.09■□□□□ 0.49
CIITAP33076 AC004840.1-201ENST00000636359 365 ntBASIC18.09■□□□□ 0.49
CIITAP33076 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
CIITAP33076 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 AL391005.1-201ENST00000623953 2435 ntBASIC18.09■□□□□ 0.49
CIITAP33076 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CIITAP33076 AC024909.3-201ENST00000611513 2257 ntBASIC18.09■□□□□ 0.49
CIITAP33076 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CIITAP33076 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CIITAP33076 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.08■□□□□ 0.49
CIITAP33076 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CIITAP33076 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CIITAP33076 AC026691.1-201ENST00000602502 2017 ntBASIC18.08■□□□□ 0.49
CIITAP33076 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CIITAP33076 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CIITAP33076 AC136604.1-201ENST00000418535 575 ntBASIC18.08■□□□□ 0.48
CIITAP33076 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.08■□□□□ 0.48
CIITAP33076 FAM207CP-201ENST00000443486 507 ntBASIC18.08■□□□□ 0.48
CIITAP33076 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.08■□□□□ 0.48
CIITAP33076 TSPY16P-201ENST00000449843 468 ntBASIC18.08■□□□□ 0.48
CIITAP33076 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.08■□□□□ 0.48
CIITAP33076 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.08■□□□□ 0.48
CIITAP33076 HNRNPUP1-201ENST00000554987 333 ntBASIC18.08■□□□□ 0.48
CIITAP33076 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.08■□□□□ 0.48
CIITAP33076 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.08■□□□□ 0.48
CIITAP33076 AL450472.2-201ENST00000603663 1156 ntBASIC18.08■□□□□ 0.48
CIITAP33076 AC097359.3-201ENST00000603982 1210 ntBASIC18.08■□□□□ 0.48
CIITAP33076 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.08■□□□□ 0.48
CIITAP33076 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CIITAP33076 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CIITAP33076 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CIITAP33076 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.08■□□□□ 0.48
CIITAP33076 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.08■□□□□ 0.48
CIITAP33076 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.08■□□□□ 0.48
CIITAP33076 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CIITAP33076 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.08■□□□□ 0.48
CIITAP33076 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.08■□□□□ 0.48
CIITAP33076 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CIITAP33076 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.07■□□□□ 0.48
CIITAP33076 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.07■□□□□ 0.48
CIITAP33076 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.07■□□□□ 0.48
CIITAP33076 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.07■□□□□ 0.48
CIITAP33076 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.07■□□□□ 0.48
CIITAP33076 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.07■□□□□ 0.48
CIITAP33076 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CIITAP33076 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.07■□□□□ 0.48
CIITAP33076 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.07■□□□□ 0.48
CIITAP33076 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.07■□□□□ 0.48
CIITAP33076 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.07■□□□□ 0.48
CIITAP33076 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CIITAP33076 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.07■□□□□ 0.48
CIITAP33076 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.07■□□□□ 0.48
CIITAP33076 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.07■□□□□ 0.48
CIITAP33076 RN7SL204P-201ENST00000582831 262 ntBASIC18.07■□□□□ 0.48
CIITAP33076 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CIITAP33076 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.07■□□□□ 0.48
CIITAP33076 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.07■□□□□ 0.48
CIITAP33076 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CIITAP33076 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CIITAP33076 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.06■□□□□ 0.48
CIITAP33076 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
CIITAP33076 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CIITAP33076 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.06■□□□□ 0.48
CIITAP33076 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.06■□□□□ 0.48
CIITAP33076 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CIITAP33076 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CIITAP33076 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms