Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.28■□□□□ 0.2
PTPN4P29074 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PTPN4P29074 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PTPN4P29074 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
PTPN4P29074 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PTPN4P29074 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PTPN4P29074 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.28■□□□□ 0.2
PTPN4P29074 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.28■□□□□ 0.2
PTPN4P29074 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.28■□□□□ 0.2
PTPN4P29074 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.28■□□□□ 0.2
PTPN4P29074 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.28■□□□□ 0.2
PTPN4P29074 AL513190.1-201ENST00000621254 727 ntBASIC16.28■□□□□ 0.2
PTPN4P29074 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.28■□□□□ 0.2
PTPN4P29074 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.28■□□□□ 0.2
PTPN4P29074 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.28■□□□□ 0.2
PTPN4P29074 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.28■□□□□ 0.2
PTPN4P29074 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PTPN4P29074 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.28■□□□□ 0.2
PTPN4P29074 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PTPN4P29074 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PTPN4P29074 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.28■□□□□ 0.2
PTPN4P29074 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.27■□□□□ 0.2
PTPN4P29074 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.27■□□□□ 0.2
PTPN4P29074 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
PTPN4P29074 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PTPN4P29074 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PTPN4P29074 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
PTPN4P29074 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.27■□□□□ 0.2
PTPN4P29074 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.27■□□□□ 0.2
PTPN4P29074 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
PTPN4P29074 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
PTPN4P29074 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.27■□□□□ 0.2
PTPN4P29074 IGLL3P-201ENST00000412472 434 ntBASIC16.27■□□□□ 0.2
PTPN4P29074 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.27■□□□□ 0.2
PTPN4P29074 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.27■□□□□ 0.2
PTPN4P29074 AC096734.2-201ENST00000562054 433 ntBASIC16.27■□□□□ 0.2
PTPN4P29074 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.27■□□□□ 0.2
PTPN4P29074 MIR4469-201ENST00000583919 79 ntBASIC16.27■□□□□ 0.2
PTPN4P29074 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.27■□□□□ 0.2
PTPN4P29074 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.27■□□□□ 0.2
PTPN4P29074 AL596442.2-201ENST00000610240 980 ntBASIC16.27■□□□□ 0.2
PTPN4P29074 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.27■□□□□ 0.2
PTPN4P29074 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
PTPN4P29074 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTPN4P29074 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
PTPN4P29074 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN4P29074 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN4P29074 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
PTPN4P29074 AC006486.2-201ENST00000624246 2199 ntBASIC16.27■□□□□ 0.19
PTPN4P29074 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
PTPN4P29074 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.27■□□□□ 0.19
PTPN4P29074 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.27■□□□□ 0.19
PTPN4P29074 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.27■□□□□ 0.19
PTPN4P29074 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN4P29074 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN4P29074 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN4P29074 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
PTPN4P29074 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTPN4P29074 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PTPN4P29074 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.26■□□□□ 0.19
PTPN4P29074 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTPN4P29074 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.26■□□□□ 0.19
PTPN4P29074 HTR5BP-201ENST00000430851 1154 ntBASIC16.26■□□□□ 0.19
PTPN4P29074 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
PTPN4P29074 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms