Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.69■□□□□ 0.1
LDLRP01130 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.69■□□□□ 0.1
LDLRP01130 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.69■□□□□ 0.1
LDLRP01130 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.69■□□□□ 0.1
LDLRP01130 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.69■□□□□ 0.1
LDLRP01130 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.69■□□□□ 0.1
LDLRP01130 AP000344.2-201ENST00000512987 629 ntBASIC15.69■□□□□ 0.1
LDLRP01130 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LDLRP01130 AC013467.2-201ENST00000605472 835 ntBASIC15.69■□□□□ 0.1
LDLRP01130 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.69■□□□□ 0.1
LDLRP01130 AC093512.1-201ENST00000617969 520 ntBASIC15.69■□□□□ 0.1
LDLRP01130 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.69■□□□□ 0.1
LDLRP01130 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LDLRP01130 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.69■□□□□ 0.1
LDLRP01130 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LDLRP01130 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LDLRP01130 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.69■□□□□ 0.1
LDLRP01130 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.69■□□□□ 0.1
LDLRP01130 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
LDLRP01130 KRT8P49-201ENST00000604166 1432 ntBASIC15.68■□□□□ 0.1
LDLRP01130 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
LDLRP01130 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.68■□□□□ 0.1
LDLRP01130 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.68■□□□□ 0.1
LDLRP01130 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.68■□□□□ 0.1
LDLRP01130 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.68■□□□□ 0.1
LDLRP01130 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.68■□□□□ 0.1
LDLRP01130 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.68■□□□□ 0.1
LDLRP01130 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.68■□□□□ 0.1
LDLRP01130 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.68■□□□□ 0.1
LDLRP01130 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.68■□□□□ 0.1
LDLRP01130 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.68■□□□□ 0.1
LDLRP01130 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.68■□□□□ 0.1
LDLRP01130 AC004706.3-202ENST00000621574 984 ntBASIC15.68■□□□□ 0.1
LDLRP01130 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
LDLRP01130 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.68■□□□□ 0.1
LDLRP01130 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.68■□□□□ 0.1
LDLRP01130 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.68■□□□□ 0.1
LDLRP01130 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.68■□□□□ 0.1
LDLRP01130 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.68■□□□□ 0.1
LDLRP01130 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.68■□□□□ 0.1
LDLRP01130 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDLRP01130 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.67■□□□□ 0.1
LDLRP01130 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 AC006058.4-201ENST00000624016 1670 ntBASIC15.67■□□□□ 0.1
LDLRP01130 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.67■□□□□ 0.1
LDLRP01130 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.67■□□□□ 0.1
LDLRP01130 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 SPDYE21P-201ENST00000413323 827 ntBASIC15.67■□□□□ 0.1
LDLRP01130 ELK2BP-201ENST00000415014 1224 ntBASIC15.67■□□□□ 0.1
LDLRP01130 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
LDLRP01130 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.67■□□□□ 0.1
LDLRP01130 AC138761.1-201ENST00000584393 385 ntBASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms