Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.8■□□□□ 0.12
SIX3O95343 FDX1P1-201ENST00000449115 551 ntBASIC15.8■□□□□ 0.12
SIX3O95343 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.8■□□□□ 0.12
SIX3O95343 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 MIR4321-201ENST00000592276 80 ntBASIC15.8■□□□□ 0.12
SIX3O95343 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.8■□□□□ 0.12
SIX3O95343 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.8■□□□□ 0.12
SIX3O95343 AC099522.2-201ENST00000607001 744 ntBASIC15.8■□□□□ 0.12
SIX3O95343 AL161645.1-201ENST00000622716 1255 ntBASIC15.8■□□□□ 0.12
SIX3O95343 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SIX3O95343 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SIX3O95343 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.8■□□□□ 0.12
SIX3O95343 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.8■□□□□ 0.12
SIX3O95343 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SIX3O95343 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SIX3O95343 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.79■□□□□ 0.12
SIX3O95343 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.79■□□□□ 0.12
SIX3O95343 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.79■□□□□ 0.12
SIX3O95343 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SIX3O95343 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.79■□□□□ 0.12
SIX3O95343 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SIX3O95343 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.79■□□□□ 0.12
SIX3O95343 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.79■□□□□ 0.12
SIX3O95343 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.79■□□□□ 0.12
SIX3O95343 AC245100.5-201ENST00000452108 331 ntBASIC15.79■□□□□ 0.12
SIX3O95343 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.79■□□□□ 0.12
SIX3O95343 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.79■□□□□ 0.12
SIX3O95343 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.79■□□□□ 0.12
SIX3O95343 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.79■□□□□ 0.12
SIX3O95343 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.79■□□□□ 0.12
SIX3O95343 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
SIX3O95343 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SIX3O95343 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.79■□□□□ 0.12
SIX3O95343 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SIX3O95343 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.79■□□□□ 0.12
SIX3O95343 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SIX3O95343 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.79■□□□□ 0.12
SIX3O95343 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
SIX3O95343 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
SIX3O95343 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
SIX3O95343 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.78■□□□□ 0.12
SIX3O95343 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.78■□□□□ 0.12
SIX3O95343 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.78■□□□□ 0.12
SIX3O95343 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.78■□□□□ 0.12
SIX3O95343 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 SSR4P1-203ENST00000599569 2260 ntBASIC15.78■□□□□ 0.12
SIX3O95343 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
SIX3O95343 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 GPX1P2-201ENST00000429271 606 ntBASIC15.78■□□□□ 0.12
SIX3O95343 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.78■□□□□ 0.12
SIX3O95343 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.78■□□□□ 0.12
SIX3O95343 AC140113.2-201ENST00000604370 208 ntBASIC15.78■□□□□ 0.12
SIX3O95343 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms