Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
HMGB3O15347 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC13.06□□□□□ -0.32
HMGB3O15347 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC13.06□□□□□ -0.32
HMGB3O15347 AC005336.2-201ENST00000593183 939 ntBASIC13.06□□□□□ -0.32
HMGB3O15347 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC13.06□□□□□ -0.32
HMGB3O15347 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.06□□□□□ -0.32
HMGB3O15347 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
HMGB3O15347 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC13.06□□□□□ -0.32
HMGB3O15347 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
HMGB3O15347 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.06□□□□□ -0.32
HMGB3O15347 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
HMGB3O15347 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
HMGB3O15347 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 C1R-202ENST00000536053 2347 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
HMGB3O15347 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.06□□□□□ -0.32
HMGB3O15347 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.05□□□□□ -0.32
HMGB3O15347 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 BAALC-201ENST00000297574 801 ntTSL 3 BASIC13.05□□□□□ -0.32
HMGB3O15347 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 SNX5-210ENST00000481323 562 ntTSL 3 BASIC13.05□□□□□ -0.32
HMGB3O15347 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC13.05□□□□□ -0.32
HMGB3O15347 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC13.05□□□□□ -0.32
HMGB3O15347 P4HB-223ENST00000576390 439 ntTSL 4 BASIC13.05□□□□□ -0.32
HMGB3O15347 AC073592.5-201ENST00000624854 528 ntBASIC13.05□□□□□ -0.32
HMGB3O15347 FBXO22-201ENST00000308275 10725 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
HMGB3O15347 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.05□□□□□ -0.32
HMGB3O15347 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
HMGB3O15347 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 NDST1-201ENST00000261797 8030 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HMGB3O15347 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 AL031731.1-201ENST00000642131 2094 ntBASIC13.04□□□□□ -0.32
HMGB3O15347 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.04□□□□□ -0.32
HMGB3O15347 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms