Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.57■□□□□ 0.08
SLC28A1O00337 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.57■□□□□ 0.08
SLC28A1O00337 AC104109.2-201ENST00000602919 1418 ntBASIC15.57■□□□□ 0.08
SLC28A1O00337 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.57■□□□□ 0.08
SLC28A1O00337 AL596257.1-201ENST00000641463 2694 ntBASIC15.57■□□□□ 0.08
SLC28A1O00337 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.57■□□□□ 0.08
SLC28A1O00337 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.56■□□□□ 0.08
SLC28A1O00337 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
SLC28A1O00337 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.56■□□□□ 0.08
SLC28A1O00337 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SLC28A1O00337 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.56■□□□□ 0.08
SLC28A1O00337 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SLC28A1O00337 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 AC002056.1-201ENST00000395613 760 ntBASIC15.56■□□□□ 0.08
SLC28A1O00337 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 GPX1P2-201ENST00000429271 606 ntBASIC15.56■□□□□ 0.08
SLC28A1O00337 TPM4P1-201ENST00000436100 807 ntBASIC15.56■□□□□ 0.08
SLC28A1O00337 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.56■□□□□ 0.08
SLC28A1O00337 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.56■□□□□ 0.08
SLC28A1O00337 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 AC034105.1-201ENST00000563488 319 ntBASIC15.56■□□□□ 0.08
SLC28A1O00337 AC068137.2-201ENST00000605408 478 ntBASIC15.56■□□□□ 0.08
SLC28A1O00337 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SLC28A1O00337 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
SLC28A1O00337 AC020658.6-201ENST00000623564 1870 ntBASIC15.56■□□□□ 0.08
SLC28A1O00337 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SLC28A1O00337 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.56■□□□□ 0.08
SLC28A1O00337 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SLC28A1O00337 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 AC073347.1-201ENST00000421633 2643 ntBASIC15.55■□□□□ 0.08
SLC28A1O00337 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SLC28A1O00337 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SLC28A1O00337 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.55■□□□□ 0.08
SLC28A1O00337 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.55■□□□□ 0.08
SLC28A1O00337 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 AC074386.1-202ENST00000463561 864 ntBASIC15.55■□□□□ 0.08
SLC28A1O00337 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.55■□□□□ 0.08
SLC28A1O00337 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.55■□□□□ 0.08
SLC28A1O00337 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 LINC00554-201ENST00000564841 3011 ntBASIC15.55■□□□□ 0.08
SLC28A1O00337 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 AP003680.1-201ENST00000598970 3660 ntBASIC15.55■□□□□ 0.08
SLC28A1O00337 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SLC28A1O00337 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.55■□□□□ 0.08
SLC28A1O00337 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms