Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 RGS5-214ENST00000429865 754 ntTSL 3 BASIC26.07■■□□□ 1.76
IFT140Q96RY7 AC098935.1-201ENST00000446057 611 ntBASIC26.07■■□□□ 1.76
IFT140Q96RY7 HIST2H2BB-201ENST00000449108 381 ntBASIC26.07■■□□□ 1.76
IFT140Q96RY7 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC26.07■■□□□ 1.76
IFT140Q96RY7 AC103988.2-201ENST00000561804 725 ntBASIC26.07■■□□□ 1.76
IFT140Q96RY7 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC26.07■■□□□ 1.76
IFT140Q96RY7 ZACNP1-201ENST00000612259 710 ntBASIC26.07■■□□□ 1.76
IFT140Q96RY7 AC134043.2-201ENST00000624206 2238 ntBASIC26.07■■□□□ 1.76
IFT140Q96RY7 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC26.07■■□□□ 1.76
IFT140Q96RY7 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC26.07■■□□□ 1.76
IFT140Q96RY7 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
IFT140Q96RY7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
IFT140Q96RY7 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
IFT140Q96RY7 AC148477.4-201ENST00000613430 1793 ntBASIC26.07■■□□□ 1.76
IFT140Q96RY7 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
IFT140Q96RY7 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
IFT140Q96RY7 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
IFT140Q96RY7 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC26.06■■□□□ 1.76
IFT140Q96RY7 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
IFT140Q96RY7 AC116345.2-201ENST00000512837 523 ntBASIC26.06■■□□□ 1.76
IFT140Q96RY7 SYT17-208ENST00000568433 812 ntTSL 3 BASIC26.06■■□□□ 1.76
IFT140Q96RY7 AP001002.3-201ENST00000623482 206 ntBASIC26.06■■□□□ 1.76
IFT140Q96RY7 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
IFT140Q96RY7 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
IFT140Q96RY7 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC26.06■■□□□ 1.76
IFT140Q96RY7 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC26.06■■□□□ 1.76
IFT140Q96RY7 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
IFT140Q96RY7 AC134407.2-201ENST00000625089 1978 ntBASIC26.06■■□□□ 1.76
IFT140Q96RY7 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
IFT140Q96RY7 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
IFT140Q96RY7 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
IFT140Q96RY7 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
IFT140Q96RY7 AC019193.1-201ENST00000506678 823 ntBASIC26.05■■□□□ 1.76
IFT140Q96RY7 AC005740.2-201ENST00000511085 419 ntBASIC26.05■■□□□ 1.76
IFT140Q96RY7 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC26.05■■□□□ 1.76
IFT140Q96RY7 AL353770.1-201ENST00000614915 403 ntBASIC26.05■■□□□ 1.76
IFT140Q96RY7 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC26.05■■□□□ 1.76
IFT140Q96RY7 COX6A1P2-201ENST00000620597 330 ntBASIC26.05■■□□□ 1.76
IFT140Q96RY7 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC26.05■■□□□ 1.76
IFT140Q96RY7 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
IFT140Q96RY7 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
IFT140Q96RY7 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC26.05■■□□□ 1.76
IFT140Q96RY7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
IFT140Q96RY7 POLL-217ENST00000628479 1953 ntTSL 5 BASIC26.05■■□□□ 1.76
IFT140Q96RY7 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
IFT140Q96RY7 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
IFT140Q96RY7 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC26.05■■□□□ 1.76
IFT140Q96RY7 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
IFT140Q96RY7 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
IFT140Q96RY7 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
IFT140Q96RY7 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 FAM8A4P-201ENST00000435433 1213 ntBASIC26.04■■□□□ 1.76
IFT140Q96RY7 CFL1-206ENST00000527344 962 ntTSL 2 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
IFT140Q96RY7 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
IFT140Q96RY7 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
IFT140Q96RY7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
IFT140Q96RY7 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
IFT140Q96RY7 RPSAP31-201ENST00000416648 895 ntBASIC26.04■■□□□ 1.76
IFT140Q96RY7 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 CENPX-208ENST00000584347 799 ntTSL 2 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 CDK7-214ENST00000626796 358 ntTSL 5 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC26.04■■□□□ 1.76
IFT140Q96RY7 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
IFT140Q96RY7 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
IFT140Q96RY7 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
IFT140Q96RY7 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC26.03■■□□□ 1.76
IFT140Q96RY7 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC26.03■■□□□ 1.76
IFT140Q96RY7 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
IFT140Q96RY7 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC26.03■■□□□ 1.76
IFT140Q96RY7 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
IFT140Q96RY7 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
IFT140Q96RY7 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
IFT140Q96RY7 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
IFT140Q96RY7 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
IFT140Q96RY7 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC26.03■■□□□ 1.76
IFT140Q96RY7 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC26.03■■□□□ 1.76
IFT140Q96RY7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
IFT140Q96RY7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
IFT140Q96RY7 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC26.02■■□□□ 1.76
IFT140Q96RY7 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
IFT140Q96RY7 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
IFT140Q96RY7 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
IFT140Q96RY7 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
IFT140Q96RY7 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
IFT140Q96RY7 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
IFT140Q96RY7 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC26.02■■□□□ 1.76
IFT140Q96RY7 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC26.02■■□□□ 1.76
IFT140Q96RY7 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC26.02■■□□□ 1.76
IFT140Q96RY7 UBL5-208ENST00000593087 320 ntTSL 3 BASIC26.02■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms