Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AC148477.5-201ENST00000625164 1645 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 PCGF3-213ENST00000620529 1899 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 MIR648-201ENST00000385046 94 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 LINC00982-205ENST00000420957 435 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 RPL13AP23-201ENST00000480739 586 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AC092910.1-201ENST00000482027 1129 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AC098799.1-201ENST00000504752 800 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AC008735.5-201ENST00000623544 497 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AC073592.4-201ENST00000623827 446 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AC116407.3-201ENST00000623905 1129 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AF228730.7-201ENST00000641842 219 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AL365209.1-201ENST00000624418 6473 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 AC013268.4-201ENST00000637413 2228 ntBASIC15.15■□□□□ 0.02
DEPDC4Q8N2C3 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 PCDHA3-202ENST00000532566 4594 ntBASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 HNRNPDP1-201ENST00000439535 754 ntBASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 RNA5SP419-201ENST00000515908 135 ntBASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 AC025062.2-201ENST00000605477 670 ntBASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 AL589182.2-201ENST00000619332 1049 ntBASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 AC117500.6-201ENST00000624871 588 ntBASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 MGA-212ENST00000619521 1496 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
DEPDC4Q8N2C3 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.13■□□□□ 0.01
DEPDC4Q8N2C3 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms