Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 RARRES2P9-201ENST00000565168 469 ntBASIC19.51■□□□□ 0.71
VPS53Q5VIR6 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 LINC00628-201ENST00000628516 1289 ntBASIC19.51■□□□□ 0.71
VPS53Q5VIR6 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 FAM220BP-201ENST00000377689 816 ntBASIC19.5■□□□□ 0.71
VPS53Q5VIR6 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 AC061975.2-201ENST00000581722 295 ntBASIC19.5■□□□□ 0.71
VPS53Q5VIR6 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 AC093028.1-201ENST00000622998 982 ntBASIC19.5■□□□□ 0.71
VPS53Q5VIR6 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS53Q5VIR6 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.49■□□□□ 0.71
VPS53Q5VIR6 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 KRT18P28-201ENST00000453838 1332 ntBASIC19.49■□□□□ 0.71
VPS53Q5VIR6 AC010491.1-201ENST00000563101 2797 ntBASIC19.49■□□□□ 0.71
VPS53Q5VIR6 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS53Q5VIR6 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 AL162727.3-201ENST00000635661 2787 ntBASIC19.48■□□□□ 0.71
VPS53Q5VIR6 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 METTL21AP1-201ENST00000438852 635 ntBASIC19.48■□□□□ 0.71
VPS53Q5VIR6 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms