Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC88AQ3V6T2 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 NUS1P3-201ENST00000423502 862 ntBASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 RPL13AP25-201ENST00000484130 612 ntBASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 HNRNPA1P48-202ENST00000565308 961 ntBASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC88AQ3V6T2 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 VDAC1P7-201ENST00000462417 847 ntBASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 AC107373.2-201ENST00000607735 490 ntBASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC88AQ3V6T2 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 TEX30-203ENST00000376022 828 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 BTBD6P1-201ENST00000412176 1267 ntBASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 CNN2P10-201ENST00000443067 918 ntBASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 LDHBP1-201ENST00000455730 1119 ntBASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 AC025279.2-201ENST00000569730 653 ntBASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 CLUHP6-201ENST00000580789 941 ntBASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 MIR4706-201ENST00000582134 82 ntBASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 AC012313.1-201ENST00000593393 3059 ntBASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 AC011676.5-201ENST00000624864 2660 ntBASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC88AQ3V6T2 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms