Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 AC009118.2-201ENST00000613275 655 ntBASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC144BQ3MJ40 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 AC022144.1-201ENST00000602255 1580 ntBASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 GK-202ENST00000378941 458 ntTSL 3 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC144BQ3MJ40 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 AC126177.1-201ENST00000547829 2218 ntBASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 PIN1P1-201ENST00000412108 996 ntBASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 PRYP6-201ENST00000514804 343 ntBASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 AC010491.1-201ENST00000563101 2797 ntBASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC144BQ3MJ40 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC144BQ3MJ40 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms