Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
CX3CL1P78423 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CX3CL1P78423 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
CX3CL1P78423 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.08□□□□□ -0.32
CX3CL1P78423 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.08□□□□□ -0.32
CX3CL1P78423 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.08□□□□□ -0.32
CX3CL1P78423 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.08□□□□□ -0.32
CX3CL1P78423 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.08□□□□□ -0.32
CX3CL1P78423 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.08□□□□□ -0.32
CX3CL1P78423 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
CX3CL1P78423 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
CX3CL1P78423 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.08□□□□□ -0.32
CX3CL1P78423 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.08□□□□□ -0.32
CX3CL1P78423 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CX3CL1P78423 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CX3CL1P78423 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.08□□□□□ -0.32
CX3CL1P78423 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CX3CL1P78423 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CX3CL1P78423 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.07□□□□□ -0.32
CX3CL1P78423 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.07□□□□□ -0.32
CX3CL1P78423 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.07□□□□□ -0.32
CX3CL1P78423 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.07□□□□□ -0.32
CX3CL1P78423 AC099522.2-201ENST00000607001 744 ntBASIC13.07□□□□□ -0.32
CX3CL1P78423 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 C20orf181-201ENST00000623918 480 ntBASIC13.07□□□□□ -0.32
CX3CL1P78423 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.07□□□□□ -0.32
CX3CL1P78423 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 AC005622.1-201ENST00000636801 1703 ntBASIC13.07□□□□□ -0.32
CX3CL1P78423 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.07□□□□□ -0.32
CX3CL1P78423 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
CX3CL1P78423 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC13.07□□□□□ -0.32
CX3CL1P78423 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.07□□□□□ -0.32
CX3CL1P78423 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CX3CL1P78423 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CX3CL1P78423 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.06□□□□□ -0.32
CX3CL1P78423 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CX3CL1P78423 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.06□□□□□ -0.32
CX3CL1P78423 AC067930.6-201ENST00000623257 4947 ntBASIC13.06□□□□□ -0.32
CX3CL1P78423 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms