Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.6■□□□□ 0.57
CTCFP49711 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.6■□□□□ 0.57
CTCFP49711 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
CTCFP49711 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CTCFP49711 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC18.6■□□□□ 0.57
CTCFP49711 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CTCFP49711 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 CNN2P8-201ENST00000421872 913 ntBASIC18.6■□□□□ 0.57
CTCFP49711 AC134915.1-201ENST00000426461 574 ntBASIC18.6■□□□□ 0.57
CTCFP49711 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.6■□□□□ 0.57
CTCFP49711 APOA2-204ENST00000464492 530 ntTSL 3 BASIC18.6■□□□□ 0.57
CTCFP49711 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC18.6■□□□□ 0.57
CTCFP49711 MIR4741-201ENST00000579822 90 ntBASIC18.6■□□□□ 0.57
CTCFP49711 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CTCFP49711 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC18.6■□□□□ 0.57
CTCFP49711 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.6■□□□□ 0.57
CTCFP49711 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CTCFP49711 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.6■□□□□ 0.57
CTCFP49711 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CTCFP49711 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CTCFP49711 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CTCFP49711 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CTCFP49711 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CTCFP49711 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
CTCFP49711 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.59■□□□□ 0.57
CTCFP49711 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.59■□□□□ 0.57
CTCFP49711 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CTCFP49711 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC18.59■□□□□ 0.57
CTCFP49711 CYP46A4P-201ENST00000414953 267 ntBASIC18.59■□□□□ 0.57
CTCFP49711 PTPA-218ENST00000435132 618 ntTSL 2 BASIC18.59■□□□□ 0.57
CTCFP49711 EEF1DP6-201ENST00000449232 372 ntBASIC18.59■□□□□ 0.57
CTCFP49711 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.59■□□□□ 0.57
CTCFP49711 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 MIR3147-201ENST00000577811 66 ntBASIC18.59■□□□□ 0.57
CTCFP49711 AP001505.2-201ENST00000616815 443 ntBASIC18.59■□□□□ 0.57
CTCFP49711 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
CTCFP49711 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 AC141586.5-201ENST00000624546 2050 ntBASIC18.59■□□□□ 0.57
CTCFP49711 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTCFP49711 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.59■□□□□ 0.57
CTCFP49711 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CTCFP49711 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.58■□□□□ 0.57
CTCFP49711 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.58■□□□□ 0.57
CTCFP49711 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.58■□□□□ 0.57
CTCFP49711 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CTCFP49711 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CTCFP49711 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CTCFP49711 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CTCFP49711 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CTCFP49711 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CTCFP49711 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CTCFP49711 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.57
CTCFP49711 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CTCFP49711 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CTCFP49711 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CTCFP49711 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CTCFP49711 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.58■□□□□ 0.56
CTCFP49711 DEF8-202ENST00000418391 852 ntTSL 2 BASIC18.58■□□□□ 0.56
CTCFP49711 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CTCFP49711 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.58■□□□□ 0.56
CTCFP49711 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.58■□□□□ 0.56
CTCFP49711 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC18.58■□□□□ 0.56
CTCFP49711 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
CTCFP49711 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.58■□□□□ 0.56
CTCFP49711 AC124283.3-201ENST00000570869 594 ntBASIC18.58■□□□□ 0.56
CTCFP49711 AL158212.4-201ENST00000624062 1286 ntBASIC18.58■□□□□ 0.56
CTCFP49711 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.58■□□□□ 0.56
CTCFP49711 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CTCFP49711 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTCFP49711 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CTCFP49711 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTCFP49711 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CTCFP49711 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
CTCFP49711 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTCFP49711 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms