Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.31■□□□□ 0.2
PTPN4P29074 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 CDC14C-201ENST00000428251 1719 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
PTPN4P29074 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PTPN4P29074 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
PTPN4P29074 AP006288.1-201ENST00000446065 395 ntBASIC16.3■□□□□ 0.2
PTPN4P29074 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN4P29074 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.3■□□□□ 0.2
PTPN4P29074 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.3■□□□□ 0.2
PTPN4P29074 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
PTPN4P29074 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN4P29074 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN4P29074 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.3■□□□□ 0.2
PTPN4P29074 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PTPN4P29074 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.3■□□□□ 0.2
PTPN4P29074 NFIC-211ENST00000641145 8399 ntBASIC16.3■□□□□ 0.2
PTPN4P29074 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PTPN4P29074 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PTPN4P29074 PRAL-201ENST00000624952 3286 ntBASIC16.3■□□□□ 0.2
PTPN4P29074 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.3■□□□□ 0.2
PTPN4P29074 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTPN4P29074 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 AC138035.3-201ENST00000622706 2791 ntBASIC16.29■□□□□ 0.2
PTPN4P29074 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PTPN4P29074 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.29■□□□□ 0.2
PTPN4P29074 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PTPN4P29074 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.29■□□□□ 0.2
PTPN4P29074 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 LINC02447-202ENST00000501888 2146 ntBASIC16.29■□□□□ 0.2
PTPN4P29074 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
PTPN4P29074 YBX1P5-201ENST00000509441 847 ntBASIC16.29■□□□□ 0.2
PTPN4P29074 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 DUX4L17-201ENST00000557360 1267 ntBASIC16.29■□□□□ 0.2
PTPN4P29074 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.29■□□□□ 0.2
PTPN4P29074 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 C20orf181-201ENST00000623918 480 ntBASIC16.29■□□□□ 0.2
PTPN4P29074 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.29■□□□□ 0.2
PTPN4P29074 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTPN4P29074 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
PTPN4P29074 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTPN4P29074 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms