Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
ABCD3P28288 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ABCD3P28288 MIR648-201ENST00000385046 94 ntBASIC14.9□□□□□ -0.02
ABCD3P28288 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
ABCD3P28288 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ABCD3P28288 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
ABCD3P28288 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.9□□□□□ -0.02
ABCD3P28288 AL139010.1-201ENST00000454878 894 ntBASIC14.9□□□□□ -0.02
ABCD3P28288 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.9□□□□□ -0.02
ABCD3P28288 RFPL4AP1-201ENST00000530883 850 ntBASIC14.9□□□□□ -0.02
ABCD3P28288 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.9□□□□□ -0.02
ABCD3P28288 BANF1P1-201ENST00000553684 263 ntBASIC14.9□□□□□ -0.02
ABCD3P28288 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.9□□□□□ -0.02
ABCD3P28288 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ABCD3P28288 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.9□□□□□ -0.02
ABCD3P28288 AC106028.4-201ENST00000614509 607 ntBASIC14.9□□□□□ -0.02
ABCD3P28288 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ABCD3P28288 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.9□□□□□ -0.02
ABCD3P28288 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
ABCD3P28288 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
ABCD3P28288 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ABCD3P28288 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ABCD3P28288 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.9□□□□□ -0.02
ABCD3P28288 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
ABCD3P28288 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.9□□□□□ -0.02
ABCD3P28288 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ABCD3P28288 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
ABCD3P28288 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.89□□□□□ -0.03
ABCD3P28288 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
ABCD3P28288 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
ABCD3P28288 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
ABCD3P28288 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.89□□□□□ -0.03
ABCD3P28288 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
ABCD3P28288 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.89□□□□□ -0.03
ABCD3P28288 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.89□□□□□ -0.03
ABCD3P28288 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
ABCD3P28288 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
ABCD3P28288 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.89□□□□□ -0.03
ABCD3P28288 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.89□□□□□ -0.03
ABCD3P28288 HAUS4P1-201ENST00000406739 1145 ntBASIC14.89□□□□□ -0.03
ABCD3P28288 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.89□□□□□ -0.03
ABCD3P28288 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
ABCD3P28288 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.89□□□□□ -0.03
ABCD3P28288 AC107890.1-201ENST00000422478 521 ntBASIC14.89□□□□□ -0.03
ABCD3P28288 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.89□□□□□ -0.03
ABCD3P28288 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.89□□□□□ -0.03
ABCD3P28288 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.89□□□□□ -0.03
ABCD3P28288 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.89□□□□□ -0.03
ABCD3P28288 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.89□□□□□ -0.03
ABCD3P28288 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.89□□□□□ -0.03
ABCD3P28288 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.89□□□□□ -0.03
ABCD3P28288 RN7SL828P-201ENST00000607615 303 ntBASIC14.89□□□□□ -0.03
ABCD3P28288 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.89□□□□□ -0.03
ABCD3P28288 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.89□□□□□ -0.03
ABCD3P28288 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
ABCD3P28288 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
ABCD3P28288 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.89□□□□□ -0.03
ABCD3P28288 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.88□□□□□ -0.03
ABCD3P28288 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
ABCD3P28288 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ABCD3P28288 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms