Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TCRBV7S3A2A0A539 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TCRBV7S3A2A0A539 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 AL121894.2-201ENST00000602977 491 ntBASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 AL161645.1-201ENST00000622716 1255 ntBASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 AC105250.1-201ENST00000509378 2057 ntBASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TCRBV7S3A2A0A539 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 FDX1P1-201ENST00000449115 551 ntBASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 AC073389.1-201ENST00000595595 795 ntBASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 AC090616.6-203ENST00000579186 1945 ntBASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TCRBV7S3A2A0A539 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms