Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00477Q96M19 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
LINC00477Q96M19 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00477Q96M19 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00477Q96M19 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00477Q96M19 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
LINC00477Q96M19 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00477Q96M19 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.18□□□□□ -0.46
LINC00477Q96M19 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 IPPK-202ENST00000375522 882 ntTSL 3 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AC093724.1-201ENST00000448659 1027 ntBASIC12.17□□□□□ -0.46
LINC00477Q96M19 AC092910.1-201ENST00000482027 1129 ntBASIC12.17□□□□□ -0.46
LINC00477Q96M19 AC093909.1-201ENST00000504731 1122 ntBASIC12.17□□□□□ -0.46
LINC00477Q96M19 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AC109635.5-201ENST00000533593 962 ntBASIC12.17□□□□□ -0.46
LINC00477Q96M19 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 PRKN-208ENST00000610470 531 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 PRKN-209ENST00000612485 225 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AC007064.4-201ENST00000637740 555 ntBASIC12.17□□□□□ -0.46
LINC00477Q96M19 VPS51-217ENST00000639871 243 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AC104640.1-201ENST00000562617 2109 ntBASIC12.17□□□□□ -0.46
LINC00477Q96M19 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 AC097376.2-205ENST00000610159 5334 ntBASIC12.17□□□□□ -0.46
LINC00477Q96M19 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00477Q96M19 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00477Q96M19 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 HS6ST1P1-201ENST00000481504 1234 ntBASIC12.16□□□□□ -0.46
LINC00477Q96M19 CFL1-202ENST00000524553 860 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 AL773604.1-201ENST00000617417 272 ntBASIC12.16□□□□□ -0.46
LINC00477Q96M19 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 AC008677.1-201ENST00000519230 1561 ntBASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms