Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 RBPMS2P1-201ENST00000437762 623 ntBASIC19.54■□□□□ 0.72
VPS53Q5VIR6 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 AC098859.1-201ENST00000502915 1238 ntBASIC19.54■□□□□ 0.72
VPS53Q5VIR6 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 AC079781.4-201ENST00000641908 219 ntBASIC19.54■□□□□ 0.72
VPS53Q5VIR6 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS53Q5VIR6 CICP6-201ENST00000457191 2729 ntBASIC19.53■□□□□ 0.72
VPS53Q5VIR6 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 AC092183.1-201ENST00000469884 875 ntBASIC19.53■□□□□ 0.72
VPS53Q5VIR6 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 ALG1L8P-201ENST00000533887 760 ntBASIC19.53■□□□□ 0.72
VPS53Q5VIR6 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 AC026150.2-201ENST00000564693 1156 ntBASIC19.53■□□□□ 0.72
VPS53Q5VIR6 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS53Q5VIR6 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 TSEN15P1-201ENST00000423257 515 ntBASIC19.52■□□□□ 0.72
VPS53Q5VIR6 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 HLA-J-203ENST00000494367 1087 ntBASIC19.52■□□□□ 0.72
VPS53Q5VIR6 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
VPS53Q5VIR6 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS53Q5VIR6 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS53Q5VIR6 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VPS53Q5VIR6 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
VPS53Q5VIR6 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS53Q5VIR6 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.52■□□□□ 0.71
VPS53Q5VIR6 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.52■□□□□ 0.71
VPS53Q5VIR6 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
VPS53Q5VIR6 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms