Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.5□□□□□ -0.09
CLRN1P58418 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN1P58418 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
CLRN1P58418 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CLRN1P58418 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
CLRN1P58418 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
CLRN1P58418 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN1P58418 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 AC022188.1-201ENST00000620960 1664 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 YBX2P1-201ENST00000394192 760 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.49□□□□□ -0.09
CLRN1P58418 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 MCCD1P2-201ENST00000423228 335 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 SPDYE11-202ENST00000450699 704 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.49□□□□□ -0.09
CLRN1P58418 AL603832.2-201ENST00000566195 2125 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 SPDYE9P-201ENST00000570642 692 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 MTDHP5-201ENST00000598980 586 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 SPDYE10P-202ENST00000612005 668 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 SPDYE8P-202ENST00000612377 668 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 AL589702.1-201ENST00000641229 1509 ntBASIC14.49□□□□□ -0.09
CLRN1P58418 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN1P58418 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.49□□□□□ -0.09
CLRN1P58418 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.49□□□□□ -0.09
CLRN1P58418 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN1P58418 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
CLRN1P58418 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN1P58418 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN1P58418 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.48□□□□□ -0.09
CLRN1P58418 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.48□□□□□ -0.09
CLRN1P58418 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CLRN1P58418 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN1P58418 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN1P58418 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.48□□□□□ -0.09
CLRN1P58418 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN1P58418 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CLRN1P58418 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.48□□□□□ -0.09
CLRN1P58418 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN1P58418 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CLRN1P58418 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CLRN1P58418 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN1P58418 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CLRN1P58418 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLRN1P58418 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CLRN1P58418 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms