Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 POR-201ENST00000394893 2532 ntTSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 AC067930.6-201ENST00000623257 4947 ntBASIC18.96■□□□□ 0.63
MRE11P49959 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.95■□□□□ 0.62
MRE11P49959 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 AL671710.1-201ENST00000610245 2349 ntBASIC18.95■□□□□ 0.62
MRE11P49959 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.95■□□□□ 0.62
MRE11P49959 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.95■□□□□ 0.62
MRE11P49959 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
MRE11P49959 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
MRE11P49959 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
MRE11P49959 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.95■□□□□ 0.62
MRE11P49959 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.95■□□□□ 0.62
MRE11P49959 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.95■□□□□ 0.62
MRE11P49959 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.95■□□□□ 0.62
MRE11P49959 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.95■□□□□ 0.62
MRE11P49959 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.95■□□□□ 0.62
MRE11P49959 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.95■□□□□ 0.62
MRE11P49959 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC18.95■□□□□ 0.62
MRE11P49959 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.95■□□□□ 0.62
MRE11P49959 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC18.95■□□□□ 0.62
MRE11P49959 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
MRE11P49959 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.95■□□□□ 0.62
MRE11P49959 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
MRE11P49959 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC18.95■□□□□ 0.62
MRE11P49959 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
MRE11P49959 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
MRE11P49959 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
MRE11P49959 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
MRE11P49959 AL049757.1-201ENST00000616842 1596 ntBASIC18.94■□□□□ 0.62
MRE11P49959 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
MRE11P49959 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 YBX2P1-201ENST00000394192 760 ntBASIC18.94■□□□□ 0.62
MRE11P49959 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.94■□□□□ 0.62
MRE11P49959 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 AC068472.1-201ENST00000474589 881 ntBASIC18.94■□□□□ 0.62
MRE11P49959 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.94■□□□□ 0.62
MRE11P49959 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.94■□□□□ 0.62
MRE11P49959 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 AC011467.4-201ENST00000594891 528 ntBASIC18.94■□□□□ 0.62
MRE11P49959 AC027601.4-201ENST00000611259 610 ntBASIC18.94■□□□□ 0.62
MRE11P49959 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.94■□□□□ 0.62
MRE11P49959 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
MRE11P49959 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.94■□□□□ 0.62
MRE11P49959 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC18.94■□□□□ 0.62
MRE11P49959 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MRE11P49959 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
MRE11P49959 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
MRE11P49959 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.93■□□□□ 0.62
MRE11P49959 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC18.93■□□□□ 0.62
MRE11P49959 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.93■□□□□ 0.62
MRE11P49959 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
MRE11P49959 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms