Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.11■□□□□ 0.33
LIG3P49916 IGLL3P-201ENST00000412472 434 ntBASIC17.11■□□□□ 0.33
LIG3P49916 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 AL359258.3-201ENST00000622910 2331 ntBASIC17.11■□□□□ 0.33
LIG3P49916 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 AC126755.1-201ENST00000525846 6405 ntBASIC17.11■□□□□ 0.33
LIG3P49916 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LIG3P49916 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.11■□□□□ 0.33
LIG3P49916 AC026748.1-201ENST00000624349 3251 ntBASIC17.11■□□□□ 0.33
LIG3P49916 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIG3P49916 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LIG3P49916 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LIG3P49916 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.1■□□□□ 0.33
LIG3P49916 SLC25A1P3-201ENST00000395415 828 ntBASIC17.1■□□□□ 0.33
LIG3P49916 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.1■□□□□ 0.33
LIG3P49916 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.1■□□□□ 0.33
LIG3P49916 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 AC040169.1-201ENST00000565382 521 ntBASIC17.1■□□□□ 0.33
LIG3P49916 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.1■□□□□ 0.33
LIG3P49916 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.1■□□□□ 0.33
LIG3P49916 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.1■□□□□ 0.33
LIG3P49916 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LIG3P49916 MTHFR-217ENST00000641820 1569 ntBASIC17.1■□□□□ 0.33
LIG3P49916 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LIG3P49916 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIG3P49916 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LIG3P49916 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LIG3P49916 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
LIG3P49916 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 AC023274.1-201ENST00000418278 595 ntBASIC17.09■□□□□ 0.33
LIG3P49916 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 AC087163.2-201ENST00000457299 853 ntBASIC17.09■□□□□ 0.33
LIG3P49916 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 AC092865.5-201ENST00000545435 363 ntBASIC17.09■□□□□ 0.33
LIG3P49916 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 AC018845.2-201ENST00000568326 409 ntBASIC17.09■□□□□ 0.33
LIG3P49916 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 EGFEM1P-202ENST00000431685 1563 ntBASIC17.09■□□□□ 0.33
LIG3P49916 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.09■□□□□ 0.33
LIG3P49916 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LIG3P49916 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LIG3P49916 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LIG3P49916 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.09■□□□□ 0.33
LIG3P49916 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIG3P49916 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LIG3P49916 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIG3P49916 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIG3P49916 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIG3P49916 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIG3P49916 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIG3P49916 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms