Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.98■□□□□ 0.47
VTA1Q9NP79 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VTA1Q9NP79 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VTA1Q9NP79 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VTA1Q9NP79 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.98■□□□□ 0.47
VTA1Q9NP79 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
VTA1Q9NP79 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.97■□□□□ 0.47
VTA1Q9NP79 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 TOMM22P5-201ENST00000416399 439 ntBASIC17.97■□□□□ 0.47
VTA1Q9NP79 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.97■□□□□ 0.47
VTA1Q9NP79 AL162726.2-201ENST00000438986 1017 ntBASIC17.97■□□□□ 0.47
VTA1Q9NP79 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.97■□□□□ 0.47
VTA1Q9NP79 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.97■□□□□ 0.47
VTA1Q9NP79 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.97■□□□□ 0.47
VTA1Q9NP79 RPSAP52-203ENST00000622976 1023 ntBASIC17.97■□□□□ 0.47
VTA1Q9NP79 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
VTA1Q9NP79 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.97■□□□□ 0.47
VTA1Q9NP79 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VTA1Q9NP79 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.97■□□□□ 0.47
VTA1Q9NP79 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.96■□□□□ 0.47
VTA1Q9NP79 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
VTA1Q9NP79 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.96■□□□□ 0.47
VTA1Q9NP79 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.96■□□□□ 0.47
VTA1Q9NP79 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 BOLA2P3-201ENST00000404566 256 ntBASIC17.96■□□□□ 0.47
VTA1Q9NP79 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.96■□□□□ 0.47
VTA1Q9NP79 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.96■□□□□ 0.47
VTA1Q9NP79 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.96■□□□□ 0.47
VTA1Q9NP79 AC133539.2-201ENST00000604757 467 ntBASIC17.96■□□□□ 0.47
VTA1Q9NP79 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.96■□□□□ 0.47
VTA1Q9NP79 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VTA1Q9NP79 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
VTA1Q9NP79 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
VTA1Q9NP79 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 FAM86LP-201ENST00000478302 853 ntBASIC17.95■□□□□ 0.46
VTA1Q9NP79 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 USP32P1-208ENST00000506594 1164 ntBASIC17.95■□□□□ 0.46
VTA1Q9NP79 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 AP005482.1-201ENST00000563722 1273 ntBASIC17.95■□□□□ 0.46
VTA1Q9NP79 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 BRI3BPP1-201ENST00000594224 787 ntBASIC17.95■□□□□ 0.46
VTA1Q9NP79 BTNL10-201ENST00000595971 695 ntBASIC17.95■□□□□ 0.46
VTA1Q9NP79 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.95■□□□□ 0.46
VTA1Q9NP79 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 KRT8P22-201ENST00000562317 1415 ntBASIC17.95■□□□□ 0.46
VTA1Q9NP79 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VTA1Q9NP79 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.95■□□□□ 0.46
VTA1Q9NP79 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms