Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 AC087481.3-201ENST00000602886 1894 ntBASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 ATP5G2P1-201ENST00000433580 426 ntBASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 SART3-203ENST00000546611 1184 ntBASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC28BQ9BUN5 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 AC012569.1-201ENST00000591191 1524 ntBASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 AC011477.6-201ENST00000604980 1927 ntBASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 AC006557.2-201ENST00000592985 1240 ntBASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 CICP24-201ENST00000605464 2705 ntBASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28BQ9BUN5 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28BQ9BUN5 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms