Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC002472.2-201ENST00000442739 958 ntBASIC15.07■□□□□ 0
BEST3Q8N1M1 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.07■□□□□ 0
BEST3Q8N1M1 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
BEST3Q8N1M1 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.07■□□□□ 0
BEST3Q8N1M1 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.07■□□□□ 0
BEST3Q8N1M1 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.07■□□□□ 0
BEST3Q8N1M1 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.07■□□□□ 0
BEST3Q8N1M1 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.07■□□□□ 0
BEST3Q8N1M1 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.07■□□□□ 0
BEST3Q8N1M1 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.07■□□□□ 0
BEST3Q8N1M1 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
BEST3Q8N1M1 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
BEST3Q8N1M1 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
BEST3Q8N1M1 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
BEST3Q8N1M1 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.07■□□□□ 0
BEST3Q8N1M1 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.07■□□□□ 0
BEST3Q8N1M1 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.07■□□□□ 0
BEST3Q8N1M1 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
BEST3Q8N1M1 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.07■□□□□ 0
BEST3Q8N1M1 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
BEST3Q8N1M1 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.07■□□□□ 0
BEST3Q8N1M1 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
BEST3Q8N1M1 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
BEST3Q8N1M1 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
BEST3Q8N1M1 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
BEST3Q8N1M1 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.07■□□□□ 0
BEST3Q8N1M1 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.06■□□□□ 0
BEST3Q8N1M1 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
BEST3Q8N1M1 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.06■□□□□ 0
BEST3Q8N1M1 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.06■□□□□ 0
BEST3Q8N1M1 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
BEST3Q8N1M1 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.06■□□□□ 0
BEST3Q8N1M1 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 MIR661-201ENST00000384842 89 ntBASIC15.06■□□□□ 0
BEST3Q8N1M1 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.06■□□□□ 0
BEST3Q8N1M1 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.06■□□□□ 0
BEST3Q8N1M1 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.06■□□□□ 0
BEST3Q8N1M1 COX20P2-201ENST00000452636 358 ntBASIC15.06■□□□□ 0
BEST3Q8N1M1 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.06■□□□□ 0
BEST3Q8N1M1 HLA-V-204ENST00000476601 1289 ntBASIC15.06■□□□□ 0
BEST3Q8N1M1 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.06■□□□□ 0
BEST3Q8N1M1 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.06■□□□□ 0
BEST3Q8N1M1 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
BEST3Q8N1M1 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.06■□□□□ 0
BEST3Q8N1M1 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.06■□□□□ 0
BEST3Q8N1M1 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.06■□□□□ 0
BEST3Q8N1M1 RN7SL204P-201ENST00000582831 262 ntBASIC15.06■□□□□ 0
BEST3Q8N1M1 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.06■□□□□ 0
BEST3Q8N1M1 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.06■□□□□ 0
BEST3Q8N1M1 AL590560.3-201ENST00000623350 461 ntBASIC15.06■□□□□ 0
BEST3Q8N1M1 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.06■□□□□ 0
BEST3Q8N1M1 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.06■□□□□ 0
BEST3Q8N1M1 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.06■□□□□ 0
BEST3Q8N1M1 TSPY26P-202ENST00000565928 3884 ntBASIC15.06■□□□□ 0
BEST3Q8N1M1 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.06■□□□□ 0
BEST3Q8N1M1 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.06■□□□□ 0
BEST3Q8N1M1 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.06■□□□□ 0
BEST3Q8N1M1 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.06■□□□□ 0
BEST3Q8N1M1 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
BEST3Q8N1M1 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
BEST3Q8N1M1 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.05■□□□□ 0
BEST3Q8N1M1 AGGF1P2-201ENST00000426656 2106 ntBASIC15.05■□□□□ 0
BEST3Q8N1M1 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.05■□□□□ 0
BEST3Q8N1M1 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.05■□□□□ 0
BEST3Q8N1M1 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
BEST3Q8N1M1 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
BEST3Q8N1M1 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.05■□□□□ 0
BEST3Q8N1M1 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
BEST3Q8N1M1 PCDHA1-201ENST00000378133 2726 ntBASIC15.05■□□□□ 0
BEST3Q8N1M1 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.05■□□□□ -0
BEST3Q8N1M1 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
BEST3Q8N1M1 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.05■□□□□ -0
BEST3Q8N1M1 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.05■□□□□ -0
BEST3Q8N1M1 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.05■□□□□ -0
BEST3Q8N1M1 AC004890.2-204ENST00000481968 304 ntBASIC15.05■□□□□ -0
BEST3Q8N1M1 TERF1P3-201ENST00000505638 1227 ntBASIC15.05■□□□□ -0
BEST3Q8N1M1 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.05■□□□□ -0
BEST3Q8N1M1 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.05■□□□□ -0
BEST3Q8N1M1 AC105021.1-202ENST00000570572 669 ntBASIC15.05■□□□□ -0
BEST3Q8N1M1 RN7SL828P-201ENST00000607615 303 ntBASIC15.05■□□□□ -0
BEST3Q8N1M1 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms