Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 FAM220BP-201ENST00000377689 816 ntBASIC18■□□□□ 0.47
CCDC65Q8IXS2 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 RPSAP43-201ENST00000402237 625 ntBASIC18■□□□□ 0.47
CCDC65Q8IXS2 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 UPF3AP3-201ENST00000420996 769 ntBASIC18■□□□□ 0.47
CCDC65Q8IXS2 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 AC069335.1-201ENST00000489972 472 ntBASIC18■□□□□ 0.47
CCDC65Q8IXS2 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 AC022145.2-201ENST00000598203 171 ntBASIC18■□□□□ 0.47
CCDC65Q8IXS2 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC65Q8IXS2 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC65Q8IXS2 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 RNA5SP410-201ENST00000516285 106 ntBASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 AC061975.2-201ENST00000581722 295 ntBASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 AC084121.4-201ENST00000641598 221 ntBASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 AF228730.8-201ENST00000642140 221 ntBASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCDC65Q8IXS2 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 HLA-H-201ENST00000383620 1096 ntBASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 AC092865.5-201ENST00000545435 363 ntBASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 AL513210.1-201ENST00000629608 234 ntBASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC65Q8IXS2 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC65Q8IXS2 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms