Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.35■□□□□ 0.21
PTPN4P29074 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 AC097637.2-201ENST00000624096 1997 ntBASIC16.35■□□□□ 0.21
PTPN4P29074 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.35■□□□□ 0.21
PTPN4P29074 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PTPN4P29074 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 HCG4B-203ENST00000450128 991 ntBASIC16.35■□□□□ 0.21
PTPN4P29074 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.35■□□□□ 0.21
PTPN4P29074 AC004790.2-201ENST00000623588 572 ntBASIC16.35■□□□□ 0.21
PTPN4P29074 AL805961.1-202ENST00000641562 540 ntBASIC16.35■□□□□ 0.21
PTPN4P29074 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
PTPN4P29074 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.35■□□□□ 0.21
PTPN4P29074 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.35■□□□□ 0.21
PTPN4P29074 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PTPN4P29074 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.35■□□□□ 0.21
PTPN4P29074 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.35■□□□□ 0.21
PTPN4P29074 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN4P29074 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PTPN4P29074 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.34■□□□□ 0.21
PTPN4P29074 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PTPN4P29074 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.34■□□□□ 0.21
PTPN4P29074 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.34■□□□□ 0.21
PTPN4P29074 AC211486.1-202ENST00000416371 468 ntBASIC16.34■□□□□ 0.21
PTPN4P29074 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.34■□□□□ 0.21
PTPN4P29074 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN4P29074 AC211476.1-201ENST00000503899 468 ntBASIC16.34■□□□□ 0.21
PTPN4P29074 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN4P29074 AC005829.1-201ENST00000570002 483 ntBASIC16.34■□□□□ 0.21
PTPN4P29074 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN4P29074 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.34■□□□□ 0.21
PTPN4P29074 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.34■□□□□ 0.21
PTPN4P29074 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN4P29074 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN4P29074 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN4P29074 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN4P29074 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN4P29074 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PTPN4P29074 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN4P29074 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.33■□□□□ 0.21
PTPN4P29074 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN4P29074 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN4P29074 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN4P29074 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN4P29074 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
PTPN4P29074 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN4P29074 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.33■□□□□ 0.2
PTPN4P29074 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.33■□□□□ 0.2
PTPN4P29074 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.33■□□□□ 0.2
PTPN4P29074 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.33■□□□□ 0.2
PTPN4P29074 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.33■□□□□ 0.2
PTPN4P29074 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms