Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
COL8A1P27658 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
COL8A1P27658 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL8A1P27658 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
COL8A1P27658 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.11□□□□□ -0.15
COL8A1P27658 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 HINT2P1-201ENST00000419438 481 ntBASIC14.11□□□□□ -0.15
COL8A1P27658 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 ACTG1P3-201ENST00000431775 1114 ntBASIC14.11□□□□□ -0.15
COL8A1P27658 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC14.11□□□□□ -0.15
COL8A1P27658 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.11□□□□□ -0.15
COL8A1P27658 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC14.11□□□□□ -0.15
COL8A1P27658 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.11□□□□□ -0.15
COL8A1P27658 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC14.11□□□□□ -0.15
COL8A1P27658 AP001258.2-201ENST00000529891 490 ntBASIC14.11□□□□□ -0.15
COL8A1P27658 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 LINC00304-203ENST00000565008 1864 ntBASIC14.11□□□□□ -0.15
COL8A1P27658 AC092337.1-201ENST00000568699 1129 ntBASIC14.11□□□□□ -0.15
COL8A1P27658 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC14.11□□□□□ -0.15
COL8A1P27658 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
COL8A1P27658 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC14.11□□□□□ -0.15
COL8A1P27658 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.11□□□□□ -0.15
COL8A1P27658 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
COL8A1P27658 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.11□□□□□ -0.15
COL8A1P27658 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL8A1P27658 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL8A1P27658 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
COL8A1P27658 AL671710.1-201ENST00000610245 2349 ntBASIC14.1□□□□□ -0.15
COL8A1P27658 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.1□□□□□ -0.15
COL8A1P27658 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 FST-202ENST00000396947 2538 ntTSL 5 BASIC14.1□□□□□ -0.15
COL8A1P27658 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.1□□□□□ -0.15
COL8A1P27658 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
COL8A1P27658 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
COL8A1P27658 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.1□□□□□ -0.15
COL8A1P27658 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 MIR326-201ENST00000362220 95 ntBASIC14.1□□□□□ -0.15
COL8A1P27658 SPDYE17-201ENST00000412399 783 ntBASIC14.1□□□□□ -0.15
COL8A1P27658 LDHBP1-201ENST00000455730 1119 ntBASIC14.1□□□□□ -0.15
COL8A1P27658 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.1□□□□□ -0.15
COL8A1P27658 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.1□□□□□ -0.15
COL8A1P27658 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.1□□□□□ -0.15
COL8A1P27658 AP001889.1-201ENST00000525414 633 ntBASIC14.1□□□□□ -0.15
COL8A1P27658 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.1□□□□□ -0.15
COL8A1P27658 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.1□□□□□ -0.15
COL8A1P27658 MIR5572-201ENST00000583188 137 ntBASIC14.1□□□□□ -0.15
COL8A1P27658 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.1□□□□□ -0.15
COL8A1P27658 AC133539.2-201ENST00000604757 467 ntBASIC14.1□□□□□ -0.15
COL8A1P27658 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC14.1□□□□□ -0.15
COL8A1P27658 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC14.1□□□□□ -0.15
COL8A1P27658 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
COL8A1P27658 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL8A1P27658 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL8A1P27658 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms