Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 AC069224.1-201ENST00000566372 1715 ntBASIC17.1■□□□□ 0.33
KRT3P12035 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
KRT3P12035 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
KRT3P12035 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
KRT3P12035 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.09■□□□□ 0.33
KRT3P12035 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
KRT3P12035 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.09■□□□□ 0.33
KRT3P12035 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.09■□□□□ 0.33
KRT3P12035 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT3P12035 SPCS2P4-201ENST00000436160 681 ntBASIC17.09■□□□□ 0.33
KRT3P12035 TIMM8BP1-201ENST00000452384 211 ntBASIC17.09■□□□□ 0.33
KRT3P12035 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.09■□□□□ 0.33
KRT3P12035 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.09■□□□□ 0.33
KRT3P12035 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT3P12035 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.09■□□□□ 0.33
KRT3P12035 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
KRT3P12035 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.09■□□□□ 0.33
KRT3P12035 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT3P12035 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 FOXO1B-201ENST00000504678 1527 ntBASIC17.09■□□□□ 0.33
KRT3P12035 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.09■□□□□ 0.33
KRT3P12035 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 AC112504.1-201ENST00000623415 1841 ntBASIC17.09■□□□□ 0.33
KRT3P12035 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT3P12035 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.09■□□□□ 0.33
KRT3P12035 ELL2P1-201ENST00000413990 1906 ntBASIC17.09■□□□□ 0.33
KRT3P12035 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT3P12035 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.09■□□□□ 0.33
KRT3P12035 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
KRT3P12035 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
KRT3P12035 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
KRT3P12035 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
KRT3P12035 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.33
KRT3P12035 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.08■□□□□ 0.33
KRT3P12035 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.08■□□□□ 0.33
KRT3P12035 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.08■□□□□ 0.33
KRT3P12035 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.08■□□□□ 0.33
KRT3P12035 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
KRT3P12035 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.08■□□□□ 0.33
KRT3P12035 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.08■□□□□ 0.32
KRT3P12035 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.08■□□□□ 0.32
KRT3P12035 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
KRT3P12035 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 HAUS4P1-201ENST00000406739 1145 ntBASIC17.08■□□□□ 0.32
KRT3P12035 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.08■□□□□ 0.32
KRT3P12035 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
KRT3P12035 CEND1P1-201ENST00000451006 455 ntBASIC17.08■□□□□ 0.32
KRT3P12035 AC245100.5-201ENST00000452108 331 ntBASIC17.08■□□□□ 0.32
KRT3P12035 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.08■□□□□ 0.32
KRT3P12035 IGHV3-62-201ENST00000520057 340 ntBASIC17.08■□□□□ 0.32
KRT3P12035 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.08■□□□□ 0.32
KRT3P12035 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.08■□□□□ 0.32
KRT3P12035 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.08■□□□□ 0.32
KRT3P12035 LINC01225-203ENST00000563550 1244 ntBASIC17.08■□□□□ 0.32
KRT3P12035 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.08■□□□□ 0.32
KRT3P12035 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.08■□□□□ 0.32
KRT3P12035 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.08■□□□□ 0.32
KRT3P12035 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.08■□□□□ 0.32
KRT3P12035 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT3P12035 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms