Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ENPP7P5-201ENST00000541031 1031 ntBASIC14.62□□□□□ -0.07
SPTA1P02549 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.62□□□□□ -0.07
SPTA1P02549 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.62□□□□□ -0.07
SPTA1P02549 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SPTA1P02549 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.62□□□□□ -0.07
SPTA1P02549 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC14.62□□□□□ -0.07
SPTA1P02549 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SPTA1P02549 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SPTA1P02549 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
SPTA1P02549 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC14.61□□□□□ -0.07
SPTA1P02549 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.61□□□□□ -0.07
SPTA1P02549 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 MPV17-204ENST00000399052 749 ntTSL 4 BASIC14.61□□□□□ -0.07
SPTA1P02549 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.61□□□□□ -0.07
SPTA1P02549 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.61□□□□□ -0.07
SPTA1P02549 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.61□□□□□ -0.07
SPTA1P02549 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SPTA1P02549 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.61□□□□□ -0.07
SPTA1P02549 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.61□□□□□ -0.07
SPTA1P02549 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.61□□□□□ -0.07
SPTA1P02549 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.61□□□□□ -0.07
SPTA1P02549 HIST3H2BA-201ENST00000436555 524 ntBASIC14.61□□□□□ -0.07
SPTA1P02549 FTLP1-201ENST00000449155 526 ntBASIC14.61□□□□□ -0.07
SPTA1P02549 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.61□□□□□ -0.07
SPTA1P02549 AP001258.2-201ENST00000529891 490 ntBASIC14.61□□□□□ -0.07
SPTA1P02549 KRT90P-201ENST00000549264 1064 ntBASIC14.61□□□□□ -0.07
SPTA1P02549 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC14.61□□□□□ -0.07
SPTA1P02549 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.61□□□□□ -0.07
SPTA1P02549 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SPTA1P02549 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.6□□□□□ -0.07
SPTA1P02549 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 KRT8P39-201ENST00000396270 1433 ntBASIC14.6□□□□□ -0.07
SPTA1P02549 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.6□□□□□ -0.07
SPTA1P02549 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC14.6□□□□□ -0.07
SPTA1P02549 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC14.6□□□□□ -0.07
SPTA1P02549 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SPTA1P02549 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SPTA1P02549 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.6□□□□□ -0.07
SPTA1P02549 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC14.6□□□□□ -0.07
SPTA1P02549 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
SPTA1P02549 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.6□□□□□ -0.07
SPTA1P02549 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC14.6□□□□□ -0.07
SPTA1P02549 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.6□□□□□ -0.07
SPTA1P02549 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
SPTA1P02549 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC14.6□□□□□ -0.07
SPTA1P02549 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.6□□□□□ -0.07
SPTA1P02549 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.6□□□□□ -0.07
SPTA1P02549 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
SPTA1P02549 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.6□□□□□ -0.07
SPTA1P02549 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 AC007969.1-201ENST00000433675 447 ntBASIC14.6□□□□□ -0.07
SPTA1P02549 AC093724.1-201ENST00000448659 1027 ntBASIC14.6□□□□□ -0.07
SPTA1P02549 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.6□□□□□ -0.07
SPTA1P02549 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SPTA1P02549 AC024267.1-201ENST00000582320 895 ntBASIC14.6□□□□□ -0.07
SPTA1P02549 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms