Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RTN3O95197 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RTN3O95197 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.1■□□□□ 0.33
RTN3O95197 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 AC092580.3-201ENST00000430932 139 ntBASIC17.1■□□□□ 0.33
RTN3O95197 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.1■□□□□ 0.33
RTN3O95197 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.1■□□□□ 0.33
RTN3O95197 HLA-V-204ENST00000476601 1289 ntBASIC17.1■□□□□ 0.33
RTN3O95197 INGX-202ENST00000489074 768 ntBASIC17.1■□□□□ 0.33
RTN3O95197 AC027369.6-201ENST00000525520 931 ntBASIC17.1■□□□□ 0.33
RTN3O95197 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.1■□□□□ 0.33
RTN3O95197 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.1■□□□□ 0.33
RTN3O95197 AL390754.1-201ENST00000619088 582 ntBASIC17.1■□□□□ 0.33
RTN3O95197 AJ011932.1-201ENST00000621707 465 ntBASIC17.1■□□□□ 0.33
RTN3O95197 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.1■□□□□ 0.33
RTN3O95197 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.1■□□□□ 0.33
RTN3O95197 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.1■□□□□ 0.33
RTN3O95197 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.1■□□□□ 0.33
RTN3O95197 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN3O95197 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
RTN3O95197 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.1■□□□□ 0.33
RTN3O95197 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
RTN3O95197 CETN4P-206ENST00000642099 2168 ntBASIC17.09■□□□□ 0.33
RTN3O95197 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.09■□□□□ 0.33
RTN3O95197 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RTN3O95197 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RTN3O95197 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.09■□□□□ 0.33
RTN3O95197 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 FAM8A3P-201ENST00000427218 844 ntBASIC17.09■□□□□ 0.33
RTN3O95197 AC241585.1-201ENST00000433527 519 ntBASIC17.09■□□□□ 0.33
RTN3O95197 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 MTND6P24-201ENST00000440466 518 ntBASIC17.09■□□□□ 0.33
RTN3O95197 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.09■□□□□ 0.33
RTN3O95197 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RTN3O95197 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.09■□□□□ 0.33
RTN3O95197 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.09■□□□□ 0.33
RTN3O95197 AC092364.2-202ENST00000597012 1073 ntBASIC17.09■□□□□ 0.33
RTN3O95197 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.09■□□□□ 0.33
RTN3O95197 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.09■□□□□ 0.33
RTN3O95197 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.09■□□□□ 0.33
RTN3O95197 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RTN3O95197 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RTN3O95197 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.09■□□□□ 0.33
RTN3O95197 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.09■□□□□ 0.33
RTN3O95197 CROCCP1-201ENST00000426910 5675 ntBASIC17.09■□□□□ 0.33
RTN3O95197 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RTN3O95197 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTN3O95197 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTN3O95197 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTN3O95197 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.08■□□□□ 0.33
RTN3O95197 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTN3O95197 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTN3O95197 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.08■□□□□ 0.33
RTN3O95197 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTN3O95197 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.08■□□□□ 0.33
RTN3O95197 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RTN3O95197 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTN3O95197 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.08■□□□□ 0.32
RTN3O95197 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.08■□□□□ 0.32
RTN3O95197 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTN3O95197 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.08■□□□□ 0.32
RTN3O95197 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.08■□□□□ 0.32
RTN3O95197 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTN3O95197 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.08■□□□□ 0.32
RTN3O95197 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.08■□□□□ 0.32
RTN3O95197 AL512638.1-201ENST00000457493 794 ntBASIC17.08■□□□□ 0.32
RTN3O95197 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.08■□□□□ 0.32
RTN3O95197 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTN3O95197 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTN3O95197 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RTN3O95197 BANF1P1-201ENST00000553684 263 ntBASIC17.08■□□□□ 0.32
RTN3O95197 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RTN3O95197 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.08■□□□□ 0.32
RTN3O95197 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
RTN3O95197 AL138828.2-201ENST00000615812 383 ntBASIC17.08■□□□□ 0.32
RTN3O95197 SPDYE12P-201ENST00000618416 771 ntBASIC17.08■□□□□ 0.32
RTN3O95197 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RTN3O95197 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms