Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 C1orf229-201ENST00000623686 2258 ntBASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.99■■□□□ 1.11
COMMD3-BMI1R4GMX3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 RPS2P35-201ENST00000443417 897 ntBASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COMMD3-BMI1R4GMX3 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
COMMD3-BMI1R4GMX3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
COMMD3-BMI1R4GMX3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COMMD3-BMI1R4GMX3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.97■■□□□ 1.11
COMMD3-BMI1R4GMX3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COMMD3-BMI1R4GMX3 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
COMMD3-BMI1R4GMX3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COMMD3-BMI1R4GMX3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 C9orf163-202ENST00000624034 2573 ntBASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COMMD3-BMI1R4GMX3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 EP400NL-214ENST00000641289 2402 ntBASIC21.95■■□□□ 1.1
COMMD3-BMI1R4GMX3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COMMD3-BMI1R4GMX3 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COMMD3-BMI1R4GMX3 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COMMD3-BMI1R4GMX3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COMMD3-BMI1R4GMX3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.94■■□□□ 1.1
COMMD3-BMI1R4GMX3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.94■■□□□ 1.1
COMMD3-BMI1R4GMX3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COMMD3-BMI1R4GMX3 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.94■■□□□ 1.1
COMMD3-BMI1R4GMX3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COMMD3-BMI1R4GMX3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
COMMD3-BMI1R4GMX3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
COMMD3-BMI1R4GMX3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
COMMD3-BMI1R4GMX3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
COMMD3-BMI1R4GMX3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COMMD3-BMI1R4GMX3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 LINC01971-201ENST00000617888 1048 ntBASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COMMD3-BMI1R4GMX3 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 ABCB10P4-201ENST00000566803 2184 ntBASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
COMMD3-BMI1R4GMX3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COMMD3-BMI1R4GMX3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COMMD3-BMI1R4GMX3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COMMD3-BMI1R4GMX3 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
COMMD3-BMI1R4GMX3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COMMD3-BMI1R4GMX3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COMMD3-BMI1R4GMX3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COMMD3-BMI1R4GMX3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
COMMD3-BMI1R4GMX3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COMMD3-BMI1R4GMX3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms