Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 DRD5P2-201ENST00000421395 2012 ntBASIC22.87■■□□□ 1.25
PCDHGA1Q9Y5H4 AC139426.1-201ENST00000568218 2529 ntBASIC22.86■■□□□ 1.25
PCDHGA1Q9Y5H4 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22.86■■□□□ 1.25
PCDHGA1Q9Y5H4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
PCDHGA1Q9Y5H4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.86■■□□□ 1.25
PCDHGA1Q9Y5H4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHGA1Q9Y5H4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC22.86■■□□□ 1.25
PCDHGA1Q9Y5H4 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHGA1Q9Y5H4 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.85■■□□□ 1.25
PCDHGA1Q9Y5H4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.85■■□□□ 1.25
PCDHGA1Q9Y5H4 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHGA1Q9Y5H4 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHGA1Q9Y5H4 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
PCDHGA1Q9Y5H4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
PCDHGA1Q9Y5H4 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 AC106739.1-201ENST00000617035 715 ntBASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
PCDHGA1Q9Y5H4 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHGA1Q9Y5H4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHGA1Q9Y5H4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHGA1Q9Y5H4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHGA1Q9Y5H4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC22.83■■□□□ 1.25
PCDHGA1Q9Y5H4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHGA1Q9Y5H4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHGA1Q9Y5H4 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.82■■□□□ 1.24
PCDHGA1Q9Y5H4 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHGA1Q9Y5H4 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHGA1Q9Y5H4 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
PCDHGA1Q9Y5H4 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC22.82■■□□□ 1.24
PCDHGA1Q9Y5H4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC22.82■■□□□ 1.24
PCDHGA1Q9Y5H4 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.82■■□□□ 1.24
PCDHGA1Q9Y5H4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
PCDHGA1Q9Y5H4 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC22.81■■□□□ 1.24
PCDHGA1Q9Y5H4 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
PCDHGA1Q9Y5H4 AF131216.4-201ENST00000638924 1588 ntBASIC22.8■■□□□ 1.24
PCDHGA1Q9Y5H4 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHGA1Q9Y5H4 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
PCDHGA1Q9Y5H4 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHGA1Q9Y5H4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
PCDHGA1Q9Y5H4 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.79■■□□□ 1.24
PCDHGA1Q9Y5H4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PCDHGA1Q9Y5H4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.79■■□□□ 1.24
PCDHGA1Q9Y5H4 PBX2P1-201ENST00000493219 1291 ntBASIC22.79■■□□□ 1.24
PCDHGA1Q9Y5H4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PCDHGA1Q9Y5H4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PCDHGA1Q9Y5H4 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.79■■□□□ 1.24
PCDHGA1Q9Y5H4 RASSF1-AS1-201ENST00000629828 790 ntBASIC22.79■■□□□ 1.24
PCDHGA1Q9Y5H4 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
PCDHGA1Q9Y5H4 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
PCDHGA1Q9Y5H4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
PCDHGA1Q9Y5H4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
PCDHGA1Q9Y5H4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22.78■■□□□ 1.24
PCDHGA1Q9Y5H4 AC142381.2-201ENST00000566120 298 ntBASIC22.78■■□□□ 1.24
PCDHGA1Q9Y5H4 RARRES2P6-201ENST00000567333 442 ntBASIC22.78■■□□□ 1.24
PCDHGA1Q9Y5H4 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 ZNRF2P3-201ENST00000424200 374 ntBASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 MIR6722-201ENST00000617286 78 ntBASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 AP004609.3-201ENST00000610705 1884 ntBASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 SHF-206ENST00000560471 2499 ntTSL 5 BASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHGA1Q9Y5H4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHGA1Q9Y5H4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHGA1Q9Y5H4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHGA1Q9Y5H4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PCDHGA1Q9Y5H4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC22.75■■□□□ 1.23
PCDHGA1Q9Y5H4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.75■■□□□ 1.23
PCDHGA1Q9Y5H4 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
PCDHGA1Q9Y5H4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PCDHGA1Q9Y5H4 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PCDHGA1Q9Y5H4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
PCDHGA1Q9Y5H4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
PCDHGA1Q9Y5H4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.74■■□□□ 1.23
PCDHGA1Q9Y5H4 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHGA1Q9Y5H4 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHGA1Q9Y5H4 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PCDHGA1Q9Y5H4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.73■■□□□ 1.23
PCDHGA1Q9Y5H4 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC22.73■■□□□ 1.23
PCDHGA1Q9Y5H4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.72■■□□□ 1.23
PCDHGA1Q9Y5H4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.72■■□□□ 1.23
PCDHGA1Q9Y5H4 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHGA1Q9Y5H4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHGA1Q9Y5H4 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.72■■□□□ 1.23
PCDHGA1Q9Y5H4 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHGA1Q9Y5H4 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 AC092666.2-201ENST00000613287 246 ntBASIC22.71■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms