Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC30.38■■■□□ 2.45
USP42Q9H9J4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC30.38■■■□□ 2.45
USP42Q9H9J4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
USP42Q9H9J4 MIR6724-1-201ENST00000616420 92 ntBASIC30.38■■■□□ 2.45
USP42Q9H9J4 MIR6724-2-201ENST00000616483 92 ntBASIC30.38■■■□□ 2.45
USP42Q9H9J4 MIR6724-4-201ENST00000617390 92 ntBASIC30.38■■■□□ 2.45
USP42Q9H9J4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.38■■■□□ 2.45
USP42Q9H9J4 MIR6724-3-201ENST00000622482 92 ntBASIC30.38■■■□□ 2.45
USP42Q9H9J4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.38■■■□□ 2.45
USP42Q9H9J4 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
USP42Q9H9J4 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
USP42Q9H9J4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.37■■■□□ 2.45
USP42Q9H9J4 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC30.37■■■□□ 2.45
USP42Q9H9J4 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
USP42Q9H9J4 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC30.36■■■□□ 2.45
USP42Q9H9J4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC30.36■■■□□ 2.45
USP42Q9H9J4 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP42Q9H9J4 AC142472.1-201ENST00000612013 1741 ntBASIC30.36■■■□□ 2.45
USP42Q9H9J4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.35■■■□□ 2.45
USP42Q9H9J4 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC30.34■■■□□ 2.45
USP42Q9H9J4 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC30.34■■■□□ 2.45
USP42Q9H9J4 MTDHP2-201ENST00000601468 714 ntBASIC30.34■■■□□ 2.45
USP42Q9H9J4 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
USP42Q9H9J4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
USP42Q9H9J4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC30.34■■■□□ 2.45
USP42Q9H9J4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.33■■■□□ 2.45
USP42Q9H9J4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
USP42Q9H9J4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC30.33■■■□□ 2.45
USP42Q9H9J4 MIR4466-201ENST00000606121 54 ntBASIC30.33■■■□□ 2.45
USP42Q9H9J4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
USP42Q9H9J4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
USP42Q9H9J4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC30.33■■■□□ 2.45
USP42Q9H9J4 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
USP42Q9H9J4 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
USP42Q9H9J4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC30.32■■■□□ 2.44
USP42Q9H9J4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.32■■■□□ 2.44
USP42Q9H9J4 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
USP42Q9H9J4 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC30.32■■■□□ 2.44
USP42Q9H9J4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
USP42Q9H9J4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP42Q9H9J4 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP42Q9H9J4 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP42Q9H9J4 AC096631.2-201ENST00000436136 790 ntBASIC30.3■■■□□ 2.44
USP42Q9H9J4 AC011551.1-201ENST00000614101 683 ntBASIC30.3■■■□□ 2.44
USP42Q9H9J4 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC30.3■■■□□ 2.44
USP42Q9H9J4 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP42Q9H9J4 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP42Q9H9J4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC30.29■■■□□ 2.44
USP42Q9H9J4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP42Q9H9J4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.29■■■□□ 2.44
USP42Q9H9J4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC30.29■■■□□ 2.44
USP42Q9H9J4 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP42Q9H9J4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
USP42Q9H9J4 AC005837.3-201ENST00000612163 286 ntBASIC30.28■■■□□ 2.44
USP42Q9H9J4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
USP42Q9H9J4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
USP42Q9H9J4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC30.28■■■□□ 2.44
USP42Q9H9J4 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC30.28■■■□□ 2.44
USP42Q9H9J4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC30.27■■■□□ 2.44
USP42Q9H9J4 AL512631.2-201ENST00000604634 923 ntBASIC30.27■■■□□ 2.44
USP42Q9H9J4 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USP42Q9H9J4 AL356740.2-201ENST00000601559 647 ntBASIC30.26■■■□□ 2.44
USP42Q9H9J4 GAK-223ENST00000628912 497 ntTSL 5 BASIC30.26■■■□□ 2.44
USP42Q9H9J4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC30.26■■■□□ 2.44
USP42Q9H9J4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC30.26■■■□□ 2.43
USP42Q9H9J4 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
USP42Q9H9J4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
USP42Q9H9J4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC30.25■■■□□ 2.43
USP42Q9H9J4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
USP42Q9H9J4 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
USP42Q9H9J4 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
USP42Q9H9J4 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
USP42Q9H9J4 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
USP42Q9H9J4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC30.24■■■□□ 2.43
USP42Q9H9J4 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC30.24■■■□□ 2.43
USP42Q9H9J4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
USP42Q9H9J4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC30.24■■■□□ 2.43
USP42Q9H9J4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC30.24■■■□□ 2.43
USP42Q9H9J4 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
USP42Q9H9J4 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
USP42Q9H9J4 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
USP42Q9H9J4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC30.23■■■□□ 2.43
USP42Q9H9J4 PKM-203ENST00000389093 2279 ntTSL 5 BASIC30.23■■■□□ 2.43
USP42Q9H9J4 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
USP42Q9H9J4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC30.23■■■□□ 2.43
USP42Q9H9J4 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
USP42Q9H9J4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC30.22■■■□□ 2.43
USP42Q9H9J4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC30.22■■■□□ 2.43
USP42Q9H9J4 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
USP42Q9H9J4 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
USP42Q9H9J4 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
USP42Q9H9J4 AP004609.3-201ENST00000610705 1884 ntBASIC30.21■■■□□ 2.43
USP42Q9H9J4 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
USP42Q9H9J4 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC30.21■■■□□ 2.43
USP42Q9H9J4 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
USP42Q9H9J4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
USP42Q9H9J4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC30.21■■■□□ 2.43
USP42Q9H9J4 AC133561.4-201ENST00000566112 224 ntBASIC30.21■■■□□ 2.43
USP42Q9H9J4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
USP42Q9H9J4 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms