Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC17.61■□□□□ 0.41
LINC00477Q96M19 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LINC00477Q96M19 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LINC00477Q96M19 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
LINC00477Q96M19 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC17.61■□□□□ 0.41
LINC00477Q96M19 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LINC00477Q96M19 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC17.6■□□□□ 0.41
LINC00477Q96M19 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LINC00477Q96M19 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LINC00477Q96M19 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LINC00477Q96M19 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LINC00477Q96M19 HES4-202ENST00000428771 1040 ntTSL 2 BASIC17.6■□□□□ 0.41
LINC00477Q96M19 SRP68-213ENST00000629930 165 ntTSL 5 BASIC17.6■□□□□ 0.41
LINC00477Q96M19 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LINC00477Q96M19 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
LINC00477Q96M19 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LINC00477Q96M19 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LINC00477Q96M19 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LINC00477Q96M19 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LINC00477Q96M19 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LINC00477Q96M19 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LINC00477Q96M19 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LINC00477Q96M19 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LINC00477Q96M19 CEP120-209ENST00000515110 606 ntTSL 3 BASIC17.59■□□□□ 0.41
LINC00477Q96M19 PVT1-219ENST00000523427 938 ntTSL 3 BASIC17.59■□□□□ 0.41
LINC00477Q96M19 AC093536.1-201ENST00000569153 554 ntBASIC17.59■□□□□ 0.41
LINC00477Q96M19 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LINC00477Q96M19 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
LINC00477Q96M19 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LINC00477Q96M19 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LINC00477Q96M19 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
LINC00477Q96M19 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LINC00477Q96M19 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LINC00477Q96M19 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC17.58■□□□□ 0.4
LINC00477Q96M19 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LINC00477Q96M19 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LINC00477Q96M19 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LINC00477Q96M19 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LINC00477Q96M19 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.57■□□□□ 0.4
LINC00477Q96M19 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LINC00477Q96M19 GFER-205ENST00000569451 517 ntTSL 5 BASIC17.57■□□□□ 0.4
LINC00477Q96M19 MIR6089-201ENST00000616698 64 ntBASIC17.57■□□□□ 0.4
LINC00477Q96M19 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LINC00477Q96M19 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
LINC00477Q96M19 RARA-203ENST00000394086 2008 ntTSL 2 BASIC17.57■□□□□ 0.4
LINC00477Q96M19 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LINC00477Q96M19 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC00477Q96M19 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC17.56■□□□□ 0.4
LINC00477Q96M19 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC00477Q96M19 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
LINC00477Q96M19 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC00477Q96M19 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC00477Q96M19 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC00477Q96M19 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC00477Q96M19 TMEM202-AS1-202ENST00000565181 2325 ntBASIC17.55■□□□□ 0.4
LINC00477Q96M19 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC00477Q96M19 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC00477Q96M19 RPS2-202ENST00000526522 924 ntTSL 2 BASIC17.55■□□□□ 0.4
LINC00477Q96M19 AC007029.1-201ENST00000604183 313 ntBASIC17.55■□□□□ 0.4
LINC00477Q96M19 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC17.55■□□□□ 0.4
LINC00477Q96M19 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC00477Q96M19 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC00477Q96M19 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC00477Q96M19 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LINC00477Q96M19 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.54■□□□□ 0.4
LINC00477Q96M19 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
LINC00477Q96M19 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LINC00477Q96M19 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LINC00477Q96M19 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC17.54■□□□□ 0.4
LINC00477Q96M19 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.54■□□□□ 0.4
LINC00477Q96M19 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LINC00477Q96M19 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LINC00477Q96M19 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LINC00477Q96M19 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LINC00477Q96M19 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LINC00477Q96M19 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LINC00477Q96M19 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
LINC00477Q96M19 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LINC00477Q96M19 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
LINC00477Q96M19 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC17.52■□□□□ 0.4
LINC00477Q96M19 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LINC00477Q96M19 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC17.52■□□□□ 0.4
LINC00477Q96M19 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LINC00477Q96M19 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LINC00477Q96M19 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
LINC00477Q96M19 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC17.52■□□□□ 0.39
LINC00477Q96M19 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00477Q96M19 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00477Q96M19 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC17.51■□□□□ 0.39
LINC00477Q96M19 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC17.51■□□□□ 0.39
LINC00477Q96M19 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00477Q96M19 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC17.51■□□□□ 0.39
LINC00477Q96M19 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
LINC00477Q96M19 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LINC00477Q96M19 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00477Q96M19 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.51■□□□□ 0.39
LINC00477Q96M19 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00477Q96M19 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LINC00477Q96M19 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LINC00477Q96M19 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms