Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
RUFY4Q6ZNE9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
RUFY4Q6ZNE9 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
RUFY4Q6ZNE9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
RUFY4Q6ZNE9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
RUFY4Q6ZNE9 UNC93B8-201ENST00000511903 705 ntBASIC26.36■■□□□ 1.81
RUFY4Q6ZNE9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RUFY4Q6ZNE9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RUFY4Q6ZNE9 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.35■■□□□ 1.81
RUFY4Q6ZNE9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC26.35■■□□□ 1.81
RUFY4Q6ZNE9 AC137630.3-201ENST00000607245 391 ntBASIC26.35■■□□□ 1.81
RUFY4Q6ZNE9 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.34■■□□□ 1.81
RUFY4Q6ZNE9 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
RUFY4Q6ZNE9 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
RUFY4Q6ZNE9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
RUFY4Q6ZNE9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RUFY4Q6ZNE9 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.34■■□□□ 1.81
RUFY4Q6ZNE9 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.34■■□□□ 1.81
RUFY4Q6ZNE9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RUFY4Q6ZNE9 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RUFY4Q6ZNE9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.32■■□□□ 1.8
RUFY4Q6ZNE9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC26.32■■□□□ 1.8
RUFY4Q6ZNE9 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RUFY4Q6ZNE9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.32■■□□□ 1.8
RUFY4Q6ZNE9 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 AC021242.3-201ENST00000607598 1377 ntBASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.31■■□□□ 1.8
RUFY4Q6ZNE9 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
RUFY4Q6ZNE9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.3■■□□□ 1.8
RUFY4Q6ZNE9 MIR4281-201ENST00000580852 62 ntBASIC26.3■■□□□ 1.8
RUFY4Q6ZNE9 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RUFY4Q6ZNE9 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RUFY4Q6ZNE9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
RUFY4Q6ZNE9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.29■■□□□ 1.8
RUFY4Q6ZNE9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.29■■□□□ 1.8
RUFY4Q6ZNE9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.29■■□□□ 1.8
RUFY4Q6ZNE9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.29■■□□□ 1.8
RUFY4Q6ZNE9 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.28■■□□□ 1.8
RUFY4Q6ZNE9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
RUFY4Q6ZNE9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.28■■□□□ 1.8
RUFY4Q6ZNE9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RUFY4Q6ZNE9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 TSPY9P-201ENST00000440215 945 ntBASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 TSPY11P-201ENST00000442607 1045 ntBASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
RUFY4Q6ZNE9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RUFY4Q6ZNE9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RUFY4Q6ZNE9 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
RUFY4Q6ZNE9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RUFY4Q6ZNE9 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RUFY4Q6ZNE9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RUFY4Q6ZNE9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.26■■□□□ 1.79
RUFY4Q6ZNE9 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 KRT16P3-201ENST00000439127 1283 ntBASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RUFY4Q6ZNE9 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RUFY4Q6ZNE9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RUFY4Q6ZNE9 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RUFY4Q6ZNE9 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.23■■□□□ 1.79
RUFY4Q6ZNE9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
RUFY4Q6ZNE9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RUFY4Q6ZNE9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.23■■□□□ 1.79
RUFY4Q6ZNE9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
RUFY4Q6ZNE9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
RUFY4Q6ZNE9 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
RUFY4Q6ZNE9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms