Protein–RNA interactions for Protein: Q07955

SRSF1, Serine/arginine-rich splicing factor 1, humanhuman

Known RBP eCLIP

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1Q07955 RECQL4-201ENST00000301323 781 ntTSL 315.54■□□□□ 0.085e-8■■■■□ 22.7
SRSF1Q07955 RECQL4-203ENST00000529424 324 ntTSL 210.71□□□□□ -0.695e-8■■■■□ 22.7
SRSF1Q07955 STXBP2-209ENST00000595861 430 ntTSL 217.83■□□□□ 0.446e-9■■■■□ 22.6
SRSF1Q07955 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.89■□□□□ 0.291e-8■■■■□ 22.6
SRSF1Q07955 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.271e-8■■■■□ 22.6
SRSF1Q07955 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.231e-8■■■■□ 22.6
SRSF1Q07955 AC008763.2-201ENST00000598664 537 ntAPPRIS P5 TSL 514.99□□□□□ -0.016e-9■■■■□ 22.6
SRSF1Q07955 STXBP2-206ENST00000594221 747 ntTSL 314.99□□□□□ -0.016e-9■■■■□ 22.6
SRSF1Q07955 STXBP2-211ENST00000597068 1785 ntTSL 1 (best)13.86□□□□□ -0.191e-8■■■■□ 22.6
SRSF1Q07955 STXBP2-217ENST00000599737 1523 ntTSL 513.11□□□□□ -0.311e-8■■■■□ 22.6
SRSF1Q07955 CHPF2-203ENST00000482173 548 ntTSL 418.9■□□□□ 0.624e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.53■□□□□ 0.44e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-223ENST00000545396 1341 ntTSL 517.32■□□□□ 0.364e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-208ENST00000536439 1426 ntTSL 316.95■□□□□ 0.34e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.86■□□□□ 0.294e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.62■□□□□ 0.254e-7■■■■□ 22.6
SRSF1Q07955 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.11■□□□□ 0.174e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.83■□□□□ 0.124e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-213ENST00000540324 1828 ntTSL 1 (best)15.51■□□□□ 0.074e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.1■□□□□ 0.014e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-215ENST00000560599 1426 ntTSL 514.86□□□□□ -0.034e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.79□□□□□ -0.044e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.064e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-221ENST00000545056 1568 ntTSL 514.48□□□□□ -0.094e-7■■■■□ 22.6
SRSF1Q07955 KDM3A-206ENST00000452034 709 ntTSL 513.81□□□□□ -0.24e-7■■■■□ 22.6
SRSF1Q07955 KDM3A-204ENST00000427678 565 ntTSL 213.57□□□□□ -0.244e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.16□□□□□ -0.34e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC12.84□□□□□ -0.354e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.73□□□□□ -0.374e-7■■■■□ 22.6
SRSF1Q07955 OGFOD2-203ENST00000406539 2274 ntTSL 212.5□□□□□ -0.414e-7■■■■□ 22.6
SRSF1Q07955 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.434e-7■■■■□ 22.6
SRSF1Q07955 MKNK2-208ENST00000589441 803 ntTSL 511.74□□□□□ -0.534e-7■■■■□ 22.6
SRSF1Q07955 LONP2-202ENST00000416006 2056 ntTSL 211.05□□□□□ -0.644e-7■■■■□ 22.6
SRSF1Q07955 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.694e-7■■■■□ 22.6
SRSF1Q07955 SLC16A1-202ENST00000429288 865 ntTSL 310.34□□□□□ -0.754e-7■■■■□ 22.6
SRSF1Q07955 SLC16A1-205ENST00000478835 452 ntTSL 1 (best)10.12□□□□□ -0.794e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-203ENST00000397358 4082 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.84e-7■■■■□ 22.6
SRSF1Q07955 MKNK2-206ENST00000587416 4093 ntTSL 29.96□□□□□ -0.824e-7■■■■□ 22.6
SRSF1Q07955 LONP2-208ENST00000566755 2514 ntTSL 59.86□□□□□ -0.834e-7■■■■□ 22.6
SRSF1Q07955 LONP2-203ENST00000535754 2580 ntTSL 1 (best) BASIC9.42□□□□□ -0.94e-7■■■■□ 22.6
SRSF1Q07955 MKNK2-211ENST00000591142 875 ntTSL 2 BASIC9.03□□□□□ -0.964e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-208ENST00000521516 2216 ntTSL 28.7□□□□□ -1.024e-7■■■■□ 22.6
SRSF1Q07955 LONP2-201ENST00000285737 8199 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.024e-7■■■■□ 22.6
SRSF1Q07955 LONP2-206ENST00000565867 1969 ntTSL 38.41□□□□□ -1.064e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-201ENST00000287701 3184 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.134e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-204ENST00000517386 761 ntTSL 47.8□□□□□ -1.164e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC6.05□□□□□ -1.444e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.83□□□□□ -1.484e-7■■■■□ 22.6
SRSF1Q07955 KDM3A-208ENST00000463013 577 ntTSL 34.24□□□□□ -1.734e-7■■■■□ 22.6
SRSF1Q07955 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.16□□□□□ -1.744e-7■■■■□ 22.6
SRSF1Q07955 ZFPM2-204ENST00000518180 596 ntTSL 43.95□□□□□ -1.784e-7■■■■□ 22.6
SRSF1Q07955 GARS-205ENST00000470392 469 ntTSL 53.91□□□□□ -1.784e-7■■■■□ 22.6
SRSF1Q07955 GARS-202ENST00000444666 619 ntTSL 32.69□□□□□ -1.984e-7■■■■□ 22.6
SRSF1Q07955 GARS-204ENST00000465748 447 ntTSL 22.33□□□□□ -2.044e-7■■■■□ 22.6
SRSF1Q07955 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.11□□□□□ -0.311e-13■■■■□ 22.6
SRSF1Q07955 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.561e-13■■■■□ 22.6
SRSF1Q07955 ARID4B-205ENST00000421364 5151 ntTSL 1 (best)9.78□□□□□ -0.841e-13■■■■□ 22.6
SRSF1Q07955 ARID4B-212ENST00000491632 3823 ntTSL 1 (best)8.77□□□□□ -11e-13■■■■□ 22.6
SRSF1Q07955 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.234e-8■■■■□ 22.6
SRSF1Q07955 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.44■□□□□ 0.064e-8■■■■□ 22.6
SRSF1Q07955 LUC7L-207ENST00000426094 2737 ntTSL 1 (best)15.41■□□□□ 0.064e-8■■■■□ 22.6
SRSF1Q07955 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.85□□□□□ -0.034e-8■■■■□ 22.6
SRSF1Q07955 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.38□□□□□ -0.114e-8■■■■□ 22.6
SRSF1Q07955 LUC7L-206ENST00000419516 1211 ntTSL 512.13□□□□□ -0.474e-8■■■■□ 22.6
SRSF1Q07955 LUC7L-217ENST00000490762 2643 ntTSL 1 (best)11.73□□□□□ -0.534e-8■■■■□ 22.6
SRSF1Q07955 LUC7L-205ENST00000418978 989 ntTSL 511.7□□□□□ -0.544e-8■■■■□ 22.6
SRSF1Q07955 LUC7L-203ENST00000397780 1335 ntTSL 5 BASIC11.57□□□□□ -0.564e-8■■■■□ 22.6
SRSF1Q07955 LUC7L-210ENST00000430864 695 ntTSL 510.64□□□□□ -0.714e-8■■■■□ 22.6
SRSF1Q07955 VPS13D-201ENST00000011700 10969 ntTSL 1 (best)5.23□□□□□ -1.573e-6■■■■□ 22.5
SRSF1Q07955 VPS13D-202ENST00000460333 4910 ntTSL 25.08□□□□□ -1.63e-6■■■■□ 22.5
SRSF1Q07955 VPS13D-209ENST00000487188 3990 ntTSL 24.96□□□□□ -1.623e-6■■■■□ 22.5
SRSF1Q07955 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.272e-9■■■■□ 22.5
SRSF1Q07955 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.932e-9■■■■□ 22.5
SRSF1Q07955 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.66■□□□□ 0.92e-9■■■■□ 22.5
SRSF1Q07955 AC011448.1-202ENST00000586674 1071 ntTSL 217.06■□□□□ 0.322e-9■■■■□ 22.5
SRSF1Q07955 YJEFN3-202ENST00000458210 2785 ntTSL 213.35□□□□□ -0.272e-9■■■■□ 22.5
SRSF1Q07955 ADSL-211ENST00000623632 847 ntTSL 517.9■□□□□ 0.461e-6■■■■□ 22.5
SRSF1Q07955 ADSL-218ENST00000636265 1239 ntTSL 515.88■□□□□ 0.131e-6■■■■□ 22.5
SRSF1Q07955 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC14.05□□□□□ -0.161e-6■■■■□ 22.5
SRSF1Q07955 ADSL-222ENST00000637669 1927 ntTSL 513.6□□□□□ -0.231e-6■■■■□ 22.5
SRSF1Q07955 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.43□□□□□ -0.261e-6■■■■□ 22.5
SRSF1Q07955 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC13.09□□□□□ -0.311e-6■■■■□ 22.5
SRSF1Q07955 ADSL-214ENST00000624474 678 ntTSL 511.53□□□□□ -0.561e-6■■■■□ 22.5
SRSF1Q07955 ADSL-209ENST00000623287 856 ntTSL 510.71□□□□□ -0.691e-6■■■■□ 22.5
SRSF1Q07955 ADSL-221ENST00000637666 1135 ntTSL 510.71□□□□□ -0.691e-6■■■■□ 22.5
SRSF1Q07955 AL022238.4-201ENST00000639722 4563 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.821e-6■■■■□ 22.5
SRSF1Q07955 ADSL-219ENST00000636433 1444 ntTSL 59.79□□□□□ -0.841e-6■■■■□ 22.5
SRSF1Q07955 ADSL-205ENST00000477111 826 ntTSL 39.16□□□□□ -0.941e-6■■■■□ 22.5
SRSF1Q07955 ADSL-208ENST00000623063 4359 ntAPPRIS P2 TSL 1 (best) BASIC8.06□□□□□ -1.121e-6■■■■□ 22.5
SRSF1Q07955 ADSL-206ENST00000480775 713 ntTSL 1 (best)8.01□□□□□ -1.131e-6■■■■□ 22.5
SRSF1Q07955 ADSL-223ENST00000638161 668 ntTSL 57.47□□□□□ -1.211e-6■■■■□ 22.5
SRSF1Q07955 ADSL-216ENST00000625194 1079 ntTSL 57.1□□□□□ -1.271e-6■■■■□ 22.5
SRSF1Q07955 ADSL-212ENST00000623978 712 ntTSL 56.19□□□□□ -1.421e-6■■■■□ 22.5
SRSF1Q07955 ADSL-217ENST00000636124 280 ntTSL 55.01□□□□□ -1.611e-6■■■■□ 22.5
SRSF1Q07955 ACSM3-203ENST00000501740 839 ntTSL 514.01□□□□□ -0.173e-6■■■■□ 22.5
SRSF1Q07955 ACSM3-213ENST00000568235 558 ntTSL 411.97□□□□□ -0.493e-6■■■■□ 22.5
SRSF1Q07955 ACSM3-205ENST00000561584 561 ntTSL 411.57□□□□□ -0.563e-6■■■■□ 22.5
SRSF1Q07955 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.832e-7■■■■□ 22.5
SRSF1Q07955 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.972e-7■■■■□ 22.5
SRSF1Q07955 RABGEF1-211ENST00000503687 4139 ntTSL 29.96□□□□□ -0.816e-7■■■■□ 22.4
Retrieved 100 of 14,836 protein–RNA pairs in 573.5 ms