Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.9■□□□□ 0.62
CX3CL1P78423 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CX3CL1P78423 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 CEBPA-AS1-201ENST00000592982 2198 ntBASIC18.9■□□□□ 0.62
CX3CL1P78423 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.9■□□□□ 0.62
CX3CL1P78423 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC18.9■□□□□ 0.62
CX3CL1P78423 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.89■□□□□ 0.62
CX3CL1P78423 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CX3CL1P78423 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CX3CL1P78423 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
CX3CL1P78423 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CX3CL1P78423 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CX3CL1P78423 MIR6765-201ENST00000614092 87 ntBASIC18.89■□□□□ 0.61
CX3CL1P78423 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CX3CL1P78423 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CX3CL1P78423 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CX3CL1P78423 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CX3CL1P78423 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CX3CL1P78423 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CX3CL1P78423 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CX3CL1P78423 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CX3CL1P78423 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CX3CL1P78423 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CX3CL1P78423 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CX3CL1P78423 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.87■□□□□ 0.61
CX3CL1P78423 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CX3CL1P78423 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.86■□□□□ 0.61
CX3CL1P78423 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC18.86■□□□□ 0.61
CX3CL1P78423 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
CX3CL1P78423 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CX3CL1P78423 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.86■□□□□ 0.61
CX3CL1P78423 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CX3CL1P78423 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.86■□□□□ 0.61
CX3CL1P78423 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CX3CL1P78423 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CX3CL1P78423 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CX3CL1P78423 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CX3CL1P78423 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CX3CL1P78423 IDNK-203ENST00000405990 629 ntTSL 2 BASIC18.85■□□□□ 0.61
CX3CL1P78423 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CX3CL1P78423 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CX3CL1P78423 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CX3CL1P78423 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CX3CL1P78423 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.85■□□□□ 0.61
CX3CL1P78423 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CX3CL1P78423 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CX3CL1P78423 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CX3CL1P78423 RPS2P7-201ENST00000447334 885 ntBASIC18.84■□□□□ 0.61
CX3CL1P78423 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.84■□□□□ 0.61
CX3CL1P78423 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CX3CL1P78423 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.84■□□□□ 0.61
CX3CL1P78423 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CX3CL1P78423 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CX3CL1P78423 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC18.83■□□□□ 0.61
CX3CL1P78423 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CX3CL1P78423 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CX3CL1P78423 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CX3CL1P78423 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CX3CL1P78423 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CX3CL1P78423 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC18.83■□□□□ 0.6
CX3CL1P78423 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CX3CL1P78423 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CX3CL1P78423 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CX3CL1P78423 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CX3CL1P78423 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
CX3CL1P78423 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CX3CL1P78423 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CX3CL1P78423 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CX3CL1P78423 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CX3CL1P78423 DUX4L18-201ENST00000553347 1267 ntBASIC18.82■□□□□ 0.6
CX3CL1P78423 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CX3CL1P78423 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.82■□□□□ 0.6
CX3CL1P78423 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.82■□□□□ 0.6
CX3CL1P78423 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CX3CL1P78423 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CX3CL1P78423 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CX3CL1P78423 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CX3CL1P78423 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CX3CL1P78423 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CX3CL1P78423 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CX3CL1P78423 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CX3CL1P78423 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CX3CL1P78423 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CX3CL1P78423 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CX3CL1P78423 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CX3CL1P78423 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CX3CL1P78423 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC18.8■□□□□ 0.6
CX3CL1P78423 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC18.8■□□□□ 0.6
CX3CL1P78423 AC004987.1-201ENST00000428627 508 ntBASIC18.8■□□□□ 0.6
CX3CL1P78423 ATP5G2P3-201ENST00000429083 425 ntBASIC18.8■□□□□ 0.6
CX3CL1P78423 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC18.8■□□□□ 0.6
CX3CL1P78423 AC087393.1-201ENST00000582896 145 ntBASIC18.8■□□□□ 0.6
CX3CL1P78423 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms