Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.9■■□□□ 1.1
RNF4P78317 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.9■■□□□ 1.1
RNF4P78317 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
RNF4P78317 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RNF4P78317 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF4P78317 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
RNF4P78317 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
RNF4P78317 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RNF4P78317 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
RNF4P78317 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.89■■□□□ 1.09
RNF4P78317 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
RNF4P78317 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF4P78317 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF4P78317 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF4P78317 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.88■■□□□ 1.09
RNF4P78317 AL031848.2-201ENST00000607670 837 ntBASIC21.88■■□□□ 1.09
RNF4P78317 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF4P78317 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF4P78317 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF4P78317 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.87■■□□□ 1.09
RNF4P78317 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
RNF4P78317 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
RNF4P78317 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.87■■□□□ 1.09
RNF4P78317 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RNF4P78317 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.86■■□□□ 1.09
RNF4P78317 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RNF4P78317 KRT18P24-201ENST00000344739 1156 ntBASIC21.86■■□□□ 1.09
RNF4P78317 AL451085.2-201ENST00000605085 799 ntBASIC21.86■■□□□ 1.09
RNF4P78317 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RNF4P78317 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RNF4P78317 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RNF4P78317 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
RNF4P78317 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.85■■□□□ 1.09
RNF4P78317 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.85■■□□□ 1.09
RNF4P78317 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RNF4P78317 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.85■■□□□ 1.09
RNF4P78317 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.85■■□□□ 1.09
RNF4P78317 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RNF4P78317 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.84■■□□□ 1.09
RNF4P78317 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RNF4P78317 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RNF4P78317 AC120024.1-201ENST00000562672 995 ntBASIC21.83■■□□□ 1.09
RNF4P78317 THA1P-201ENST00000590384 1145 ntBASIC21.83■■□□□ 1.09
RNF4P78317 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
RNF4P78317 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RNF4P78317 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
RNF4P78317 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RNF4P78317 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RNF4P78317 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RNF4P78317 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.82■■□□□ 1.08
RNF4P78317 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.82■■□□□ 1.08
RNF4P78317 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
RNF4P78317 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.81■■□□□ 1.08
RNF4P78317 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.81■■□□□ 1.08
RNF4P78317 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.81■■□□□ 1.08
RNF4P78317 SLC6A10P-202ENST00000431994 2058 ntBASIC21.81■■□□□ 1.08
RNF4P78317 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
RNF4P78317 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF4P78317 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF4P78317 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF4P78317 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.8■■□□□ 1.08
RNF4P78317 AC011551.1-201ENST00000614101 683 ntBASIC21.8■■□□□ 1.08
RNF4P78317 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RNF4P78317 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RNF4P78317 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF4P78317 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF4P78317 AC009299.2-201ENST00000482477 511 ntBASIC21.79■■□□□ 1.08
RNF4P78317 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RNF4P78317 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF4P78317 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RNF4P78317 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.79■■□□□ 1.08
RNF4P78317 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF4P78317 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF4P78317 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.79■■□□□ 1.08
RNF4P78317 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF4P78317 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF4P78317 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF4P78317 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF4P78317 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.78■■□□□ 1.08
RNF4P78317 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
RNF4P78317 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF4P78317 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.08
RNF4P78317 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF4P78317 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF4P78317 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RNF4P78317 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.77■■□□□ 1.08
RNF4P78317 AL035685.1-201ENST00000636663 812 ntBASIC21.77■■□□□ 1.08
RNF4P78317 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.77■■□□□ 1.08
RNF4P78317 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RNF4P78317 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF4P78317 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.77■■□□□ 1.07
RNF4P78317 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF4P78317 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF4P78317 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.76■■□□□ 1.07
RNF4P78317 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.76■■□□□ 1.07
RNF4P78317 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF4P78317 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF4P78317 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
RNF4P78317 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.76■■□□□ 1.07
RNF4P78317 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms