Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
FOXA1P55317 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
FOXA1P55317 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
FOXA1P55317 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.9■■□□□ 1.26
FOXA1P55317 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
FOXA1P55317 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
FOXA1P55317 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
FOXA1P55317 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
FOXA1P55317 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.26
FOXA1P55317 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.89■■□□□ 1.26
FOXA1P55317 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
FOXA1P55317 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.88■■□□□ 1.25
FOXA1P55317 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.88■■□□□ 1.25
FOXA1P55317 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
FOXA1P55317 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
FOXA1P55317 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.88■■□□□ 1.25
FOXA1P55317 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.87■■□□□ 1.25
FOXA1P55317 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
FOXA1P55317 LINC00543-201ENST00000567234 1845 ntBASIC22.87■■□□□ 1.25
FOXA1P55317 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.87■■□□□ 1.25
FOXA1P55317 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
FOXA1P55317 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.87■■□□□ 1.25
FOXA1P55317 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.87■■□□□ 1.25
FOXA1P55317 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.87■■□□□ 1.25
FOXA1P55317 AC007029.1-201ENST00000604183 313 ntBASIC22.87■■□□□ 1.25
FOXA1P55317 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.87■■□□□ 1.25
FOXA1P55317 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
FOXA1P55317 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
FOXA1P55317 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
FOXA1P55317 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.86■■□□□ 1.25
FOXA1P55317 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.86■■□□□ 1.25
FOXA1P55317 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
FOXA1P55317 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
FOXA1P55317 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.86■■□□□ 1.25
FOXA1P55317 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
FOXA1P55317 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.85■■□□□ 1.25
FOXA1P55317 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
FOXA1P55317 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
FOXA1P55317 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
FOXA1P55317 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
FOXA1P55317 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.85■■□□□ 1.25
FOXA1P55317 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.85■■□□□ 1.25
FOXA1P55317 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
FOXA1P55317 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
FOXA1P55317 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
FOXA1P55317 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
FOXA1P55317 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
FOXA1P55317 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
FOXA1P55317 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
FOXA1P55317 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
FOXA1P55317 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
FOXA1P55317 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
FOXA1P55317 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
FOXA1P55317 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC22.83■■□□□ 1.25
FOXA1P55317 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.82■■□□□ 1.24
FOXA1P55317 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
FOXA1P55317 MIR4449-201ENST00000578365 66 ntBASIC22.82■■□□□ 1.24
FOXA1P55317 RAP2CP1-202ENST00000605179 643 ntBASIC22.82■■□□□ 1.24
FOXA1P55317 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
FOXA1P55317 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
FOXA1P55317 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
FOXA1P55317 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
FOXA1P55317 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
FOXA1P55317 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
FOXA1P55317 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
FOXA1P55317 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
FOXA1P55317 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
FOXA1P55317 MIR6089-201ENST00000616698 64 ntBASIC22.81■■□□□ 1.24
FOXA1P55317 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
FOXA1P55317 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
FOXA1P55317 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
FOXA1P55317 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
FOXA1P55317 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
FOXA1P55317 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
FOXA1P55317 GPX1-201ENST00000419349 1106 ntBASIC22.8■■□□□ 1.24
FOXA1P55317 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
FOXA1P55317 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
FOXA1P55317 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
FOXA1P55317 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
FOXA1P55317 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.79■■□□□ 1.24
FOXA1P55317 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.79■■□□□ 1.24
FOXA1P55317 AC026202.3-201ENST00000600805 1127 ntBASIC22.79■■□□□ 1.24
FOXA1P55317 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.79■■□□□ 1.24
FOXA1P55317 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.79■■□□□ 1.24
FOXA1P55317 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
FOXA1P55317 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
FOXA1P55317 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.79■■□□□ 1.24
FOXA1P55317 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.79■■□□□ 1.24
FOXA1P55317 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
FOXA1P55317 AC004812.2-201ENST00000611079 2094 ntBASIC22.78■■□□□ 1.24
FOXA1P55317 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.78■■□□□ 1.24
FOXA1P55317 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
FOXA1P55317 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.78■■□□□ 1.24
FOXA1P55317 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.78■■□□□ 1.24
FOXA1P55317 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
FOXA1P55317 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
FOXA1P55317 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.78■■□□□ 1.24
FOXA1P55317 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.78■■□□□ 1.24
FOXA1P55317 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.78■■□□□ 1.24
FOXA1P55317 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.78■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms