Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC31.83■■■□□ 2.69
COL18A1P39060 SNX5-217ENST00000606557 1087 ntBASIC31.83■■■□□ 2.69
COL18A1P39060 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC31.82■■■□□ 2.69
COL18A1P39060 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL18A1P39060 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
COL18A1P39060 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL18A1P39060 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC31.82■■■□□ 2.68
COL18A1P39060 CLTA-210ENST00000540080 989 ntTSL 2 BASIC31.82■■■□□ 2.68
COL18A1P39060 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
COL18A1P39060 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL18A1P39060 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC31.82■■■□□ 2.68
COL18A1P39060 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL18A1P39060 AC133561.4-201ENST00000566112 224 ntBASIC31.81■■■□□ 2.68
COL18A1P39060 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL18A1P39060 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL18A1P39060 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL18A1P39060 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL18A1P39060 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC31.81■■■□□ 2.68
COL18A1P39060 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
COL18A1P39060 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC31.8■■■□□ 2.68
COL18A1P39060 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL18A1P39060 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
COL18A1P39060 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC31.79■■■□□ 2.68
COL18A1P39060 TFPT-201ENST00000391757 774 ntTSL 5 BASIC31.79■■■□□ 2.68
COL18A1P39060 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL18A1P39060 AC005837.3-201ENST00000612163 286 ntBASIC31.79■■■□□ 2.68
COL18A1P39060 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.79■■■□□ 2.68
COL18A1P39060 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL18A1P39060 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL18A1P39060 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL18A1P39060 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC31.79■■■□□ 2.68
COL18A1P39060 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
COL18A1P39060 AK3-203ENST00000447596 705 ntTSL 2 BASIC31.79■■■□□ 2.68
COL18A1P39060 CLTA-206ENST00000466396 695 ntTSL 2 BASIC31.79■■■□□ 2.68
COL18A1P39060 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
COL18A1P39060 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC31.78■■■□□ 2.68
COL18A1P39060 ZNRF2P3-201ENST00000424200 374 ntBASIC31.78■■■□□ 2.68
COL18A1P39060 RARRES2P6-201ENST00000567333 442 ntBASIC31.78■■■□□ 2.68
COL18A1P39060 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC31.78■■■□□ 2.68
COL18A1P39060 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
COL18A1P39060 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
COL18A1P39060 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL18A1P39060 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
COL18A1P39060 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC31.77■■■□□ 2.68
COL18A1P39060 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
COL18A1P39060 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC31.77■■■□□ 2.68
COL18A1P39060 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL18A1P39060 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC31.77■■■□□ 2.68
COL18A1P39060 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC31.76■■■□□ 2.68
COL18A1P39060 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC31.76■■■□□ 2.67
COL18A1P39060 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
COL18A1P39060 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
COL18A1P39060 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC31.76■■■□□ 2.67
COL18A1P39060 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
COL18A1P39060 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC31.75■■■□□ 2.67
COL18A1P39060 AL031432.3-201ENST00000607698 485 ntBASIC31.75■■■□□ 2.67
COL18A1P39060 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL18A1P39060 SUDS3P1-201ENST00000505831 966 ntBASIC31.74■■■□□ 2.67
COL18A1P39060 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL18A1P39060 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC31.74■■■□□ 2.67
COL18A1P39060 GUK1-205ENST00000366722 850 ntTSL 3 BASIC31.73■■■□□ 2.67
COL18A1P39060 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
COL18A1P39060 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
COL18A1P39060 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
COL18A1P39060 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL18A1P39060 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.72■■■□□ 2.67
COL18A1P39060 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL18A1P39060 SSSCA1-AS1-201ENST00000567594 614 ntBASIC31.72■■■□□ 2.67
COL18A1P39060 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC31.72■■■□□ 2.67
COL18A1P39060 AC106739.1-201ENST00000617035 715 ntBASIC31.72■■■□□ 2.67
COL18A1P39060 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
COL18A1P39060 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
COL18A1P39060 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC31.71■■■□□ 2.67
COL18A1P39060 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC31.71■■■□□ 2.67
COL18A1P39060 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
COL18A1P39060 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC31.7■■■□□ 2.67
COL18A1P39060 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC31.7■■■□□ 2.67
COL18A1P39060 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.7■■■□□ 2.66
COL18A1P39060 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31.69■■■□□ 2.66
COL18A1P39060 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC31.69■■■□□ 2.66
COL18A1P39060 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
COL18A1P39060 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL18A1P39060 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL18A1P39060 AC026271.2-201ENST00000428091 497 ntBASIC31.68■■■□□ 2.66
COL18A1P39060 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
COL18A1P39060 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC31.67■■■□□ 2.66
COL18A1P39060 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL18A1P39060 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL18A1P39060 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC31.67■■■□□ 2.66
COL18A1P39060 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
COL18A1P39060 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL18A1P39060 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL18A1P39060 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC31.66■■■□□ 2.66
COL18A1P39060 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC31.66■■■□□ 2.66
COL18A1P39060 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
COL18A1P39060 SHF-208ENST00000560734 1731 ntTSL 3 BASIC31.66■■■□□ 2.66
COL18A1P39060 EBPL-204ENST00000378272 766 ntTSL 3 BASIC31.66■■■□□ 2.66
COL18A1P39060 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC31.66■■■□□ 2.66
COL18A1P39060 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
COL18A1P39060 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms