Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USF1P22415 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USF1P22415 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USF1P22415 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USF1P22415 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USF1P22415 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
USF1P22415 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
USF1P22415 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USF1P22415 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.93■□□□□ 0.78
USF1P22415 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.93■□□□□ 0.78
USF1P22415 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.93■□□□□ 0.78
USF1P22415 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.93■□□□□ 0.78
USF1P22415 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USF1P22415 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USF1P22415 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USF1P22415 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USF1P22415 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.92■□□□□ 0.78
USF1P22415 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USF1P22415 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USF1P22415 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USF1P22415 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USF1P22415 TSPY9P-201ENST00000440215 945 ntBASIC19.92■□□□□ 0.78
USF1P22415 TSPY11P-201ENST00000442607 1045 ntBASIC19.92■□□□□ 0.78
USF1P22415 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.92■□□□□ 0.78
USF1P22415 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.92■□□□□ 0.78
USF1P22415 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.91■□□□□ 0.78
USF1P22415 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
USF1P22415 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USF1P22415 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.91■□□□□ 0.78
USF1P22415 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.91■□□□□ 0.78
USF1P22415 AC021242.3-201ENST00000607598 1377 ntBASIC19.91■□□□□ 0.78
USF1P22415 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.91■□□□□ 0.78
USF1P22415 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.91■□□□□ 0.78
USF1P22415 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
USF1P22415 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USF1P22415 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.9■□□□□ 0.78
USF1P22415 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USF1P22415 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.9■□□□□ 0.78
USF1P22415 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.9■□□□□ 0.78
USF1P22415 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.9■□□□□ 0.78
USF1P22415 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USF1P22415 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.9■□□□□ 0.78
USF1P22415 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.89■□□□□ 0.77
USF1P22415 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USF1P22415 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
USF1P22415 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.89■□□□□ 0.77
USF1P22415 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USF1P22415 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
USF1P22415 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.89■□□□□ 0.77
USF1P22415 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.89■□□□□ 0.77
USF1P22415 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.89■□□□□ 0.77
USF1P22415 AP004609.3-201ENST00000610705 1884 ntBASIC19.89■□□□□ 0.77
USF1P22415 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
USF1P22415 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USF1P22415 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF1P22415 SHF-207ENST00000560540 2062 ntTSL 5 BASIC19.88■□□□□ 0.77
USF1P22415 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USF1P22415 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.88■□□□□ 0.77
USF1P22415 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF1P22415 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF1P22415 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF1P22415 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USF1P22415 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.88■□□□□ 0.77
USF1P22415 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF1P22415 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
USF1P22415 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF1P22415 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF1P22415 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USF1P22415 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USF1P22415 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.87■□□□□ 0.77
USF1P22415 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USF1P22415 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USF1P22415 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USF1P22415 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USF1P22415 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.87■□□□□ 0.77
USF1P22415 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.87■□□□□ 0.77
USF1P22415 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
USF1P22415 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
USF1P22415 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USF1P22415 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USF1P22415 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USF1P22415 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.86■□□□□ 0.77
USF1P22415 AC092028.1-203ENST00000608262 953 ntBASIC19.86■□□□□ 0.77
USF1P22415 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
USF1P22415 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USF1P22415 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.85■□□□□ 0.77
USF1P22415 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.85■□□□□ 0.77
USF1P22415 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.85■□□□□ 0.77
USF1P22415 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USF1P22415 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USF1P22415 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
USF1P22415 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USF1P22415 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.84■□□□□ 0.77
USF1P22415 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
USF1P22415 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USF1P22415 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USF1P22415 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USF1P22415 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.84■□□□□ 0.77
USF1P22415 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
USF1P22415 MIR4281-201ENST00000580852 62 ntBASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms