Protein–RNA interactions for Protein: P0C0E4

RAB40AL, Ras-related protein Rab-40A-like, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40ALP0C0E4 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
RAB40ALP0C0E4 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RAB40ALP0C0E4 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RAB40ALP0C0E4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.3■■□□□ 1.16
RAB40ALP0C0E4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RAB40ALP0C0E4 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RAB40ALP0C0E4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RAB40ALP0C0E4 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC22.29■■□□□ 1.16
RAB40ALP0C0E4 UNC93B8-201ENST00000511903 705 ntBASIC22.29■■□□□ 1.16
RAB40ALP0C0E4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC22.29■■□□□ 1.16
RAB40ALP0C0E4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RAB40ALP0C0E4 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 AC135731.1-201ENST00000569415 2548 ntBASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC22.28■■□□□ 1.16
RAB40ALP0C0E4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.27■■□□□ 1.16
RAB40ALP0C0E4 KRT16P3-201ENST00000439127 1283 ntBASIC22.27■■□□□ 1.16
RAB40ALP0C0E4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
RAB40ALP0C0E4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.27■■□□□ 1.16
RAB40ALP0C0E4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RAB40ALP0C0E4 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.27■■□□□ 1.16
RAB40ALP0C0E4 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
RAB40ALP0C0E4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC22.26■■□□□ 1.15
RAB40ALP0C0E4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.26■■□□□ 1.15
RAB40ALP0C0E4 AC092028.1-203ENST00000608262 953 ntBASIC22.26■■□□□ 1.15
RAB40ALP0C0E4 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
RAB40ALP0C0E4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
RAB40ALP0C0E4 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.25■■□□□ 1.15
RAB40ALP0C0E4 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
RAB40ALP0C0E4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
RAB40ALP0C0E4 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
RAB40ALP0C0E4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
RAB40ALP0C0E4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.24■■□□□ 1.15
RAB40ALP0C0E4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
RAB40ALP0C0E4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RAB40ALP0C0E4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RAB40ALP0C0E4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RAB40ALP0C0E4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.24■■□□□ 1.15
RAB40ALP0C0E4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.24■■□□□ 1.15
RAB40ALP0C0E4 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.24■■□□□ 1.15
RAB40ALP0C0E4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
RAB40ALP0C0E4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RAB40ALP0C0E4 TSPY9P-201ENST00000440215 945 ntBASIC22.22■■□□□ 1.15
RAB40ALP0C0E4 TSPY11P-201ENST00000442607 1045 ntBASIC22.22■■□□□ 1.15
RAB40ALP0C0E4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
RAB40ALP0C0E4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
RAB40ALP0C0E4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RAB40ALP0C0E4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.21■■□□□ 1.15
RAB40ALP0C0E4 MTURN-203ENST00000409688 843 ntTSL 2 BASIC22.21■■□□□ 1.15
RAB40ALP0C0E4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.21■■□□□ 1.15
RAB40ALP0C0E4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC22.21■■□□□ 1.15
RAB40ALP0C0E4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.21■■□□□ 1.15
RAB40ALP0C0E4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.21■■□□□ 1.15
RAB40ALP0C0E4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RAB40ALP0C0E4 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22.2■■□□□ 1.15
RAB40ALP0C0E4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 AC008406.3-201ENST00000620001 1374 ntBASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
RAB40ALP0C0E4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.19■■□□□ 1.14
RAB40ALP0C0E4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RAB40ALP0C0E4 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
RAB40ALP0C0E4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RAB40ALP0C0E4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.19■■□□□ 1.14
RAB40ALP0C0E4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
RAB40ALP0C0E4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
RAB40ALP0C0E4 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
RAB40ALP0C0E4 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RAB40ALP0C0E4 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RAB40ALP0C0E4 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RAB40ALP0C0E4 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RAB40ALP0C0E4 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
RAB40ALP0C0E4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RAB40ALP0C0E4 FOXO3B-201ENST00000395675 1928 ntBASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms