Protein–RNA interactions for Protein: P05556

ITGB1, Integrin beta-1, humanhuman

Predictions only

Length 798 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1P05556 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
ITGB1P05556 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.59■■□□□ 1.69
ITGB1P05556 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.59■■□□□ 1.69
ITGB1P05556 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
ITGB1P05556 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.58■■□□□ 1.69
ITGB1P05556 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
ITGB1P05556 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.57■■□□□ 1.68
ITGB1P05556 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
ITGB1P05556 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
ITGB1P05556 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
ITGB1P05556 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.57■■□□□ 1.68
ITGB1P05556 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.57■■□□□ 1.68
ITGB1P05556 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
ITGB1P05556 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
ITGB1P05556 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
ITGB1P05556 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.56■■□□□ 1.68
ITGB1P05556 AL136116.3-201ENST00000402907 1138 ntBASIC25.56■■□□□ 1.68
ITGB1P05556 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
ITGB1P05556 AL117332.1-201ENST00000622628 974 ntBASIC25.56■■□□□ 1.68
ITGB1P05556 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
ITGB1P05556 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
ITGB1P05556 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
ITGB1P05556 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
ITGB1P05556 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
ITGB1P05556 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
ITGB1P05556 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
ITGB1P05556 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.55■■□□□ 1.68
ITGB1P05556 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.55■■□□□ 1.68
ITGB1P05556 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.55■■□□□ 1.68
ITGB1P05556 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.55■■□□□ 1.68
ITGB1P05556 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
ITGB1P05556 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.54■■□□□ 1.68
ITGB1P05556 AC010997.5-201ENST00000609182 354 ntBASIC25.54■■□□□ 1.68
ITGB1P05556 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
ITGB1P05556 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.54■■□□□ 1.68
ITGB1P05556 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.54■■□□□ 1.68
ITGB1P05556 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
ITGB1P05556 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
ITGB1P05556 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
ITGB1P05556 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.53■■□□□ 1.68
ITGB1P05556 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
ITGB1P05556 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
ITGB1P05556 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
ITGB1P05556 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.52■■□□□ 1.68
ITGB1P05556 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
ITGB1P05556 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
ITGB1P05556 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.52■■□□□ 1.68
ITGB1P05556 MIR3621-201ENST00000580529 85 ntBASIC25.52■■□□□ 1.68
ITGB1P05556 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
ITGB1P05556 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
ITGB1P05556 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.51■■□□□ 1.67
ITGB1P05556 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.51■■□□□ 1.67
ITGB1P05556 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
ITGB1P05556 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
ITGB1P05556 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
ITGB1P05556 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
ITGB1P05556 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
ITGB1P05556 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
ITGB1P05556 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.5■■□□□ 1.67
ITGB1P05556 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.5■■□□□ 1.67
ITGB1P05556 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
ITGB1P05556 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.5■■□□□ 1.67
ITGB1P05556 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
ITGB1P05556 MIR6724-1-201ENST00000616420 92 ntBASIC25.5■■□□□ 1.67
ITGB1P05556 MIR6724-2-201ENST00000616483 92 ntBASIC25.5■■□□□ 1.67
ITGB1P05556 MIR6724-4-201ENST00000617390 92 ntBASIC25.5■■□□□ 1.67
ITGB1P05556 AC110285.6-201ENST00000617652 491 ntBASIC25.5■■□□□ 1.67
ITGB1P05556 MIR6724-3-201ENST00000622482 92 ntBASIC25.5■■□□□ 1.67
ITGB1P05556 ERN1-208ENST00000606895 2068 ntBASIC25.49■■□□□ 1.67
ITGB1P05556 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
ITGB1P05556 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
ITGB1P05556 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.49■■□□□ 1.67
ITGB1P05556 MTDHP2-201ENST00000601468 714 ntBASIC25.49■■□□□ 1.67
ITGB1P05556 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.49■■□□□ 1.67
ITGB1P05556 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
ITGB1P05556 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
ITGB1P05556 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.48■■□□□ 1.67
ITGB1P05556 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.48■■□□□ 1.67
ITGB1P05556 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.48■■□□□ 1.67
ITGB1P05556 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.48■■□□□ 1.67
ITGB1P05556 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
ITGB1P05556 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.47■■□□□ 1.67
ITGB1P05556 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
ITGB1P05556 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
ITGB1P05556 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
ITGB1P05556 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.47■■□□□ 1.67
ITGB1P05556 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
ITGB1P05556 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
ITGB1P05556 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
ITGB1P05556 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
ITGB1P05556 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
ITGB1P05556 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
ITGB1P05556 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
ITGB1P05556 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
ITGB1P05556 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.45■■□□□ 1.66
ITGB1P05556 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.45■■□□□ 1.66
ITGB1P05556 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
ITGB1P05556 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
ITGB1P05556 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.45■■□□□ 1.66
ITGB1P05556 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms