Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CACNA1FO60840 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CACNA1FO60840 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CACNA1FO60840 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
CACNA1FO60840 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
CACNA1FO60840 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.41
CACNA1FO60840 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC30.13■■■□□ 2.41
CACNA1FO60840 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CACNA1FO60840 YBX1P4-201ENST00000392794 808 ntBASIC30.13■■■□□ 2.41
CACNA1FO60840 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CACNA1FO60840 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CACNA1FO60840 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.12■■■□□ 2.41
CACNA1FO60840 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CACNA1FO60840 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
CACNA1FO60840 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CACNA1FO60840 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.11■■■□□ 2.41
CACNA1FO60840 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC30.11■■■□□ 2.41
CACNA1FO60840 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CACNA1FO60840 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CACNA1FO60840 THA1P-201ENST00000590384 1145 ntBASIC30.1■■■□□ 2.41
CACNA1FO60840 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.1■■■□□ 2.41
CACNA1FO60840 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
CACNA1FO60840 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC30.09■■■□□ 2.41
CACNA1FO60840 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC30.09■■■□□ 2.41
CACNA1FO60840 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CACNA1FO60840 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CACNA1FO60840 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CACNA1FO60840 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CACNA1FO60840 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CACNA1FO60840 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC30.07■■■□□ 2.4
CACNA1FO60840 PRTG-204ENST00000561292 833 ntTSL 3 BASIC30.07■■■□□ 2.4
CACNA1FO60840 SHF-207ENST00000560540 2062 ntTSL 5 BASIC30.07■■■□□ 2.4
CACNA1FO60840 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
CACNA1FO60840 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CACNA1FO60840 Z92544.1-202ENST00000571933 1220 ntBASIC30.06■■■□□ 2.4
CACNA1FO60840 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CACNA1FO60840 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CACNA1FO60840 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CACNA1FO60840 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
CACNA1FO60840 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CACNA1FO60840 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
CACNA1FO60840 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC30.06■■■□□ 2.4
CACNA1FO60840 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CACNA1FO60840 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CACNA1FO60840 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CACNA1FO60840 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CACNA1FO60840 MIR6089-201ENST00000616698 64 ntBASIC30.05■■■□□ 2.4
CACNA1FO60840 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CACNA1FO60840 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CACNA1FO60840 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CACNA1FO60840 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CACNA1FO60840 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC30.04■■■□□ 2.4
CACNA1FO60840 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CACNA1FO60840 SSSCA1-AS1-201ENST00000567594 614 ntBASIC30.03■■■□□ 2.4
CACNA1FO60840 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CACNA1FO60840 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC30.03■■■□□ 2.4
CACNA1FO60840 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CACNA1FO60840 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC30.02■■■□□ 2.4
CACNA1FO60840 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CACNA1FO60840 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CACNA1FO60840 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
CACNA1FO60840 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.01■■■□□ 2.4
CACNA1FO60840 AL031848.2-201ENST00000607670 837 ntBASIC30.01■■■□□ 2.4
CACNA1FO60840 SLC6A10P-202ENST00000431994 2058 ntBASIC30.01■■■□□ 2.4
CACNA1FO60840 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
CACNA1FO60840 AC120024.1-201ENST00000562672 995 ntBASIC30.01■■■□□ 2.39
CACNA1FO60840 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.01■■■□□ 2.39
CACNA1FO60840 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CACNA1FO60840 TRIR-205ENST00000592273 783 ntTSL 3 BASIC30■■■□□ 2.39
CACNA1FO60840 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CACNA1FO60840 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CACNA1FO60840 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
CACNA1FO60840 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CACNA1FO60840 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CACNA1FO60840 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC29.99■■■□□ 2.39
CACNA1FO60840 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC29.99■■■□□ 2.39
CACNA1FO60840 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CACNA1FO60840 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC29.98■■■□□ 2.39
CACNA1FO60840 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC29.98■■■□□ 2.39
CACNA1FO60840 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
CACNA1FO60840 BX664725.1-201ENST00000438252 379 ntBASIC29.98■■■□□ 2.39
CACNA1FO60840 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC29.98■■■□□ 2.39
CACNA1FO60840 AC137630.3-201ENST00000607245 391 ntBASIC29.98■■■□□ 2.39
CACNA1FO60840 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC29.98■■■□□ 2.39
CACNA1FO60840 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CACNA1FO60840 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC29.97■■■□□ 2.39
CACNA1FO60840 SENP5-202ENST00000419026 973 ntTSL 3 BASIC29.97■■■□□ 2.39
CACNA1FO60840 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC29.97■■■□□ 2.39
CACNA1FO60840 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC29.97■■■□□ 2.39
CACNA1FO60840 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
CACNA1FO60840 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
CACNA1FO60840 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC29.97■■■□□ 2.39
CACNA1FO60840 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC29.97■■■□□ 2.39
CACNA1FO60840 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC29.96■■■□□ 2.39
CACNA1FO60840 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC29.96■■■□□ 2.39
CACNA1FO60840 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC29.96■■■□□ 2.39
CACNA1FO60840 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC29.96■■■□□ 2.39
CACNA1FO60840 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC29.96■■■□□ 2.39
CACNA1FO60840 AL035685.1-201ENST00000636663 812 ntBASIC29.96■■■□□ 2.39
CACNA1FO60840 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC29.96■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms